Literature DB >> 23403119

High-throughput approaches to understanding gene function and mapping network architecture in bacteria.

Ana Rita Brochado1, Athanasios Typas.   

Abstract

Advances in sequencing technology have provided an unprecedented view of bacterial diversity, along with a daunting number of novel genes. Within this new reality lies the challenge of developing large-scale approaches to assign function to the new genes and place them in pathways. Here, we highlight recent advances on this front, focusing on how high-throughput gene-gene, gene-drug and drug-drug interactions can yield functional and mechanistic inferences in bacteria.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2013        PMID: 23403119     DOI: 10.1016/j.mib.2013.01.008

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  20 in total

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2.  Bacterial regulatory networks--from self-organizing molecules to cell shape and patterns in bacterial communities.

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3.  Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis.

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Review 4.  Molecular phenotyping of infection-associated small non-coding RNAs.

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-11-05       Impact factor: 6.237

Review 5.  Emerging and evolving concepts in gene essentiality.

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Review 7.  High-throughput bacterial functional genomics in the sequencing era.

Authors:  Andrew N Gray; Byoung-Mo Koo; Anthony L Shiver; Jason M Peters; Hendrik Osadnik; Carol A Gross
Journal:  Curr Opin Microbiol       Date:  2015-09-01       Impact factor: 7.934

8.  Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs.

Authors:  Anthony L Shiver; Hendrik Osadnik; Jason M Peters; Rachel A Mooney; Peter I Wu; Kemardo K Henry; Hannes Braberg; Nevan J Krogan; James C Hu; Robert Landick; Kerwyn Casey Huang; Carol A Gross
Journal:  Mol Cell       Date:  2021-05-20       Impact factor: 17.970

9.  Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA.

Authors:  Masatoshi Miyakoshi; Yanjie Chao; Jörg Vogel
Journal:  EMBO J       Date:  2015-01-28       Impact factor: 11.598

10.  Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.

Authors:  Qinghua Wang; Keerthi Prasad Venkataramanan; Hongzhan Huang; Eleftherios T Papoutsakis; Cathy H Wu
Journal:  BMC Syst Biol       Date:  2013-11-06
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