| Literature DB >> 23401653 |
Jeremy A Guggenheim1, George McMahon, John P Kemp, Saeed Akhtar, Beate St Pourcain, Kate Northstone, Susan M Ring, David M Evans, George Davey Smith, Nicholas J Timpson, Cathy Williams.
Abstract
PURPOSE: Corneal curvature is a key determinant of the refractive power of the eye. Variants in two genes, FKBP12-rapamycin complex-associated protein 1 (FRAP1) on chromosome 1p36.2 and platelet-derived growth factor receptor alpha (PDGFRA) on chromosome 4q12, have shown genome-wide significant association with normal variation in corneal curvature in a study of subjects of Asian origin. Variants at the PDGFRA locus have also shown genome-wide significant association with corneal astigmatism. Whether these variants influence other ocular parameters such as axial length has yet to be reported. We performed a genome-wide association study for corneal curvature in white European subjects from a population-based birth cohort, with the aim of replicating and extending the above findings.Entities:
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Year: 2013 PMID: 23401653 PMCID: PMC3566893
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Biometric data for ALSPAC subjects. (n=1968 subjects with complete information available: corneal curvature, axial length, height and genotypes).
| Parameters | Boys (n=914) | Girls (n=1054) | ||
|---|---|---|---|---|
| mean | 95% CI | mean | 95% CI | |
| Age (years) | 15.44 | 15.42-15.46 | 15.47 | 15.45-15.49 |
| Height (cm) | 174.8 | 174.3-175.3 | 164.7 | 164.3-165.0 |
| Axial length (mm) | 23.7 | 23.64-23.75 | 23.16 | 23.11-23.21 |
| Corneal curvature (mm) | 7.886 | 7.869-7.903 | 7.766 | 7.751-7.781 |
Figure 1Distributions of biometric data. (n=1968 subjects with complete phenotypic and genetic information).
ALSPAC GWAS results for the PDGFRA region. (n=2023 subjects with corneal curvature and genetic information available).
| Marker | CHR | POS | A1 | Freq | Beta | SE | P value |
|---|---|---|---|---|---|---|---|
| 4 | 54797316 | A | 0.22 | −0.176 | 0.037 | 2.78×10–6 | |
| 4 | 54797182 | C | 0.22 | −0.175 | 0.037 | 2.81×10–6 | |
| 4 | 54795246 | A | 0.22 | −0.175 | 0.037 | 2.99×10–6 | |
| 4 | 54795588 | G | 0.22 | −0.175 | 0.037 | 2.99×10–6 | |
| 4 | 54793921 | G | 0.22 | −0.174 | 0.037 | 3.06×10–6 | |
| 4 | 54789386 | T | 0.22 | −0.174 | 0.037 | 3.06×10–6 | |
| 4 | 54797498 | C | 0.21 | −0.177 | 0.039 | 4.43×10–6 | |
| 4 | 54783518 | T | 0.22 | −0.168 | 0.037 | 6.04×10–6 | |
| 4 | 54776915 | A | 0.22 | −0.168 | 0.037 | 6.20×10–6 | |
| 4 | 54780377 | G | 0.22 | −0.168 | 0.037 | 6.20×10–6 |
CHR=Chromosome; POS=human genomic position in reference assembly genome build 36.3; A1=test allele; Freq=frequency of test allele; Beta=standardised regression coefficient per copy of test allele; SE=standard error of beta.
Figure 2Genomic region plot from the Avon Longitudinal Study of Parents and Children genome-wide association study for corneal curvature.
Linear regression model for dependent variable corneal curvature with predictors sex, genotype at rs6554163 under an additive model, with and without height (n=1968).
| A – Including height in model | ||||
|---|---|---|---|---|
| Parameter | Beta | SE | P value | Partial η2 |
| sex | 0.136 | 0.053 | 9.98×10–3 | 0.003 |
| height (normal score) | 0.265 | 0.026 | 1.96×10–23 | 0.049 |
| −0.163 | 0.037 | 9.19×10–6 | 0.010 | |
All variables were transformed to normal scores for analysis.
Linear regression model for dependent variable axial length with predictors sex, genotype at rs6554163 under an additive model, with and without height (n=1968).
| Parameter | Beta | SE | P value | Partial η2 |
|---|---|---|---|---|
| sex | 0.339 | 0.052 | 5.86×10–11 | 0.022 |
| height (normal score) | 0.243 | 0.026 | 8.66×10–21 | 0.044 |
| −0.125 | 0.036 | 5.34×10–4 | 0.006 | |
All variables were transformed to normal scores for analysis.
Figure 3Associations between genotype at single nucleotide polymorphism rs6554163 and corneal curvature, axial length, and height in 15-year-old children (n=914 boys and 1054 girls) from the Avon Longitudinal Study of Parents and Children cohort. Error bars show 95% confidence interval.
Binary logistic regression model for dependent variable corneal astigmatism case versus control status or myopia case versus control status, with predictors sex and genotype at rs6554163 under an additive model (n=1968).
| A - Corneal astigmatism case versus control status | |||||
|---|---|---|---|---|---|
| Parameter | B | SE | P value | OR | 95% CI |
| sex | 0.341 | 0.092 | 2.06×10–4 | 1.406 | (1.174 to 1.683) |
| 0.210 | 0.078 | 0.007 | 1.234 | (1.058 to 1.439) | |
Figure 4Electron microscopy antibody-labeling of platelet-derived growth factor receptor alpha in a normal human cornea. Strong labeling was seen in all layers of the epithelium (A). Labeling was also evident in the stromal keratocytes, especially their cell membranes (B) and in the surrounding extracellular matrix (C). Descemet’s membrane (D) and the endothelial monolayer (E) exhibited weaker labeling. No labeling was observed in control sections in which the primary antibody was omitted (F). Abbreviations: DM=Descemet’s membrane, E=Epithelium, EN=Endothelium, KR=Keratocyte, S=Stroma.