| Literature DB >> 23401650 |
Tsutomu Sakai1, Keigo Shikishima, Masato Matsushima, Hiroshi Tsuneoka.
Abstract
PURPOSE: To examine the relationship between nonarteritic anterior ischemic optic neuropathy (NAION) and genetic polymorphisms of enzymes influencing endothelial function.Entities:
Mesh:
Substances:
Year: 2013 PMID: 23401650 PMCID: PMC3566895
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Primers for Polymerase Chain Reaction Amplification
| No | Gene | SNP | Rs No. | Primer name | marker | Sequence |
|---|---|---|---|---|---|---|
| 1 | Endothelin-1 | G5665T | F(Gtype) | FITC | CCAAGCTGAAAGGCAXGC | |
| F(Ttype) | TxR | CCCAAGCTGAAAGGCAXTC | ||||
| R | Biotin | TCACATAACGCTCTCTGGAGG | ||||
| 2 | ACEI/D | I/D | F(Itype) | FITC | CTCGATCTCCTGACCTCGTGATCC | |
| F(Dtype) | TxR | CCTGCTGCCTATACAGTCACTTTTATG | ||||
| R | Biotin | GATGTGGCCATCACATTCGTCAGAT | ||||
| 3 | MTHFR | C677T | F(Ttype) | FITC | GAGAAGGTGTCTGCGGGAXTC | |
| F(Ctype) | TxR | GAAGGTGTCTGCGGGAXCC | ||||
| R | Biotin | GAATGTGTCAGCCTCAAAGAAA |
The genotype frequencies of ET-1 gene polymorphisms in control and NAION.
| Genotype | All subjects | Males | Females | |||
|---|---|---|---|---|---|---|
| Controls | NAION | Controls | NAION | Controls | NAION | |
| G/T polymorphism | No (%) | No (%) | No (%) | No (%) | No (%) | No (%) |
| GG | 47 (46) | 14 (42) | 31 (46) | 8 (42) | 16 (46) | 6 (40) |
| GT | 46 (45) | 10 (29) | 32 (48) | 5 (26) | 14 (40) | 5 (36) |
| TT | 9 (9) | 10 (29) | 4 (6) | 6 (32) | 5 (14) | 4 (24) |
The allele frequencies of ET-1 gene polymorphisms in control and NAION.
| Allele | All subjects | Males | Females | |||
|---|---|---|---|---|---|---|
| Controls | NAION | Controls | NAION | Controls | NAION | |
| G/T polymorphism | No (%) | No (%) | No (%) | No (%) | No (%) | No (%) |
| G | 140 (69) | 38 (56) | 94 (70) | 21 (55) | 46 (66) | 17 (57) |
| T | 64 (31) | 30 (44) | 40 (30) | 17 (45) | 24 (34) | 13 (43) |
Logistic Regression Analysis.
| Risk factors logistic regression model for each risk factor separately | Odds ratio | 95% Confidence Interval | p value |
|---|---|---|---|
| Diabetes mellitus (yes/no) | 2.99 | 1.09–8.22 | 0.033 |
| Hypertension (yes/no) | 0.78 | 0.30–2.00 | 0.605 |
| Hyperlipidemia (yes/no) | 2.33 | 0.95–5.72 | 0.064 |
| Tobacco smoking (yes/no) | 1.09 | 0.46–2.59 | 0.842 |
| ET-1 TT (TT/GT) | 4.43 | 1.33–14.73 | 0.015 |
The genotype frequencies of ACE gene polymorphisms in control and NAION.
| Genotype | All subjects | Males | Females | |||
|---|---|---|---|---|---|---|
| Controls | NAION | Controls | NAION | Controls | NAION | |
| I/D polymorphism | No (%) | No (%) | No (%) | No (%) | No (%) | No (%) |
| II | 42 (41) | 15 (44) | 27 (40) | 9 (45) | 15 (43) | 6 (43) |
| ID | 47 (46) | 18 (53) | 32 (48) | 10 (50) | 15 (43) | 8 (57) |
| DD | 13 (13) | 1 (3) | 8 (12) | 1 (5) | 5 (14) | 0 (0) |
The allele frequencies of ACE gene polymorphisms in control and NAION.
| Allele | All subjects | Males | Females | |||
|---|---|---|---|---|---|---|
| Controls | NAION | Controls | NAION | Controls | NAION | |
| I/D polymorphism | No (%) | No (%) | No (%) | No (%) | No (%) | No (%) |
| I | 131 (64) | 48 (71) | 86 (64) | 28 (70) | 46 (66) | 17 (57) |
| D | 73 (36) | 20 (29) | 48 (36) | 12 (30) | 24 (34) | 13 (43) |
The genotype frequencies of MTHFR gene polymorphisms in control and NAION.
| Genotype | All subjects | Males | Females | |||
|---|---|---|---|---|---|---|
| Controls | NAION | Controls | NAION | Controls | NAION | |
| C677T polymorphism | No (%) | No (%) | No (%) | No (%) | No (%) | No (%) |
| CC | 21 (21) | 11 (32) | 14 (21) | 9 (45) | 7 (20) | 2 (14) |
| CT | 56 (55) | 15 (44) | 37 (55) | 7 (35) | 19 (54) | 8 (57) |
| TT | 25 (24) | 8 (24) | 16 (24) | 4 (20) | 9 (26) | 4 (29) |
The allele frequencies of MTHFR gene polymorphisms in control and NAION.
| Allele | All subjects | Males | Females | |||
|---|---|---|---|---|---|---|
| Controls | NAION | Controls | NAION | Controls | NAION | |
| C677T polymorphism | No (%) | No (%) | No (%) | No (%) | No (%) | No (%) |
| C | 98 (48) | 37 (54) | 65 (49) | 25 (63) | 33 (47) | 12 (43) |
| T | 106 (52) | 31 (46) | 69 (51) | 15 (37) | 37 (53) | 16 (57) |