Literature DB >> 23398247

Site-specific and regiospecific installation of methylarginine analogues into recombinant histones and insights into effector protein binding.

Daniel D Le1, Arianna T Cortesi, Samuel A Myers, Alma L Burlingame, Danica Galonić Fujimori.   

Abstract

Arginine methylation has emerged as a widespread post-translational modification with influence over myriad cellular processes. However, the molecular mechanisms underlying such methylarginine-dependent phenomena remain unclear. To aid in this research, a facile method was developed to install methylarginine analogues on recombinant protein for use in biochemical, biophysical, and structural studies. Through chemical conjugation of novel α,β-unsaturated amidine precursors with proteins, methylarginine mimics can be displayed with control of methylation site, extent, and regiospecificity. Analogue installation into histones using this strategy produced modified proteins that were recognized by antibodies specific to endogenous methylarginine, and these histones retained the capacity to form mononucleosomes. Moreover, a native methylarginine-specific binding domain was shown to interact with methylarginine analogue-modified substrates. This chemical conjugation method for installing methylarginine analogues provides an efficient route to produce homogeneous modified proteins for subsequent investigations of methylarginine-dependent processes.

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Year:  2013        PMID: 23398247      PMCID: PMC4260808          DOI: 10.1021/ja3108214

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  TDRD3 is an effector molecule for arginine-methylated histone marks.

Authors:  Yanzhong Yang; Yue Lu; Alexsandra Espejo; Jiacai Wu; Wei Xu; Shoudan Liang; Mark T Bedford
Journal:  Mol Cell       Date:  2010-12-22       Impact factor: 17.970

2.  Activity-based protein profiling of protein arginine methyltransferase 1.

Authors:  Obiamaka Obianyo; Corey P Causey; Justin E Jones; Paul R Thompson
Journal:  ACS Chem Biol       Date:  2011-08-23       Impact factor: 5.100

3.  Site-specific incorporation of arginine analogs into proteins using arginyl-tRNA synthetase.

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Journal:  Biochem Biophys Res Commun       Date:  2011-10-06       Impact factor: 3.575

4.  WDR5, a complexed protein.

Authors:  Raymond C Trievel; Ali Shilatifard
Journal:  Nat Struct Mol Biol       Date:  2009-07       Impact factor: 15.369

5.  A direct method for site-specific protein acetylation.

Authors:  Fupeng Li; Abdollah Allahverdi; Renliang Yang; Gavian Bing Jia Lua; Xiaohong Zhang; Yuan Cao; Nikolay Korolev; Lars Nordenskiöld; Chuan-Fa Liu
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-16       Impact factor: 15.336

Review 6.  Deciphering arginine methylation: Tudor tells the tale.

Authors:  Chen Chen; Timothy J Nott; Jing Jin; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2011-09-14       Impact factor: 94.444

7.  Site-specific introduction of an acetyl-lysine mimic into peptides and proteins by cysteine alkylation.

Authors:  Rong Huang; Marc A Holbert; Mary Katherine Tarrant; Sandrine Curtet; David R Colquhoun; Beverley M Dancy; Blair C Dancy; Yousang Hwang; Yong Tang; Katrina Meeth; Ronen Marmorstein; Robert N Cole; Saadi Khochbin; Philip A Cole
Journal:  J Am Chem Soc       Date:  2010-07-28       Impact factor: 15.419

8.  Methylation of FEN1 suppresses nearby phosphorylation and facilitates PCNA binding.

Authors:  Zhigang Guo; Li Zheng; Hong Xu; Huifang Dai; Mian Zhou; Mary Rose Pascua; Qin M Chen; Binghui Shen
Journal:  Nat Chem Biol       Date:  2010-08-22       Impact factor: 15.040

9.  Type I Arginine Methyltransferases PRMT1 and PRMT-3 Act Distributively.

Authors:  Knut Kölbel; Christian Ihling; Kathrin Bellmann-Sickert; Ines Neundorf; Annette G Beck-Sickinger; Andrea Sinz; Uwe Kühn; Elmar Wahle
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

Review 10.  Histone tails: ideal motifs for probing epigenetics through chemical biology approaches.

Authors:  Philipp Voigt; Danny Reinberg
Journal:  Chembiochem       Date:  2010-11-24       Impact factor: 3.164

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  15 in total

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Authors:  Qi Hu; Kevan M Shokat
Journal:  Cell       Date:  2018-04-05       Impact factor: 41.582

Review 2.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

Review 3.  Chemical biology approaches for studying posttranslational modifications.

Authors:  Aerin Yang; Kyukwang Cho; Hee-Sung Park
Journal:  RNA Biol       Date:  2017-09-21       Impact factor: 4.652

Review 4.  Strategies for Generating Modified Nucleosomes: Applications within Structural Biology Studies.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  ACS Chem Biol       Date:  2019-03-12       Impact factor: 5.100

Review 5.  Deciphering the Structure and Formation of Amyloids in Neurodegenerative Diseases With Chemical Biology Tools.

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Journal:  Front Chem       Date:  2022-05-12       Impact factor: 5.545

Review 6.  Readers of histone methylarginine marks.

Authors:  Sitaram Gayatri; Mark T Bedford
Journal:  Biochim Biophys Acta       Date:  2014-02-28

7.  Hydrazide Mimics for Protein Lysine Acylation To Assess Nucleosome Dynamics and Deubiquitinase Action.

Authors:  Shridhar Bhat; Yousang Hwang; Matthew D Gibson; Michael T Morgan; Sean D Taverna; Yingming Zhao; Cynthia Wolberger; Michael G Poirier; Philip A Cole
Journal:  J Am Chem Soc       Date:  2018-07-24       Impact factor: 15.419

8.  Differentially Isotope-Labeled Nucleosomes To Study Asymmetric Histone Modification Crosstalk by Time-Resolved NMR Spectroscopy.

Authors:  Stamatios Liokatis; Rebecca Klingberg; Song Tan; Dirk Schwarzer
Journal:  Angew Chem Int Ed Engl       Date:  2016-05-24       Impact factor: 15.336

9.  Enantioselective Total Syntheses of Methanoquinolizidine-Containing Akuammiline Alkaloids and Related Studies.

Authors:  Elias Picazo; Lucas A Morrill; Robert B Susick; Jesus Moreno; Joel M Smith; Neil K Garg
Journal:  J Am Chem Soc       Date:  2018-05-15       Impact factor: 15.419

10.  Diverse functionalization of Aurora-A kinase at specified surface and buried sites by native chemical modification.

Authors:  Fiona Rowan; Meirion Richards; Marcella Widya; Richard Bayliss; Julian Blagg
Journal:  PLoS One       Date:  2014-08-05       Impact factor: 3.240

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