Literature DB >> 23396339

Use of degradation tags to control protein levels in the Cyanobacterium Synechocystis sp. Strain PCC 6803.

Brian P Landry1, Jana Stöckel, Himadri B Pakrasi.   

Abstract

We generated a collection of ssrA-based C-terminal protein degradation tags with different degradation strengths. The steady-state fluorescence levels of different enhanced yellow fluorescent protein (eYFP) tag variants in a Synechocystis sp. indicated a tunable range from 1% to 50% of untagged eYFP.

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Year:  2013        PMID： 23396339      PMCID： PMC3623166          DOI： 10.1128/AEM.03741-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  13 in total

1.  Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis.

Authors:  J M Flynn; I Levchenko; M Seidel; S H Wickner; R T Sauer; T A Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-04       Impact factor: 11.205

2.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

3.  Engineering controllable protein degradation.

Authors:  Kathleen E McGinness; Tania A Baker; Robert T Sauer
Journal:  Mol Cell       Date:  2006-06-09       Impact factor: 17.970

4.  Clustal W and Clustal X version 2.0.

Authors:  M A Larkin; G Blackshields; N P Brown; R Chenna; P A McGettigan; H McWilliam; F Valentin; I M Wallace; A Wilm; R Lopez; J D Thompson; T J Gibson; D G Higgins
Journal:  Bioinformatics       Date:  2007-09-10       Impact factor: 6.937

5.  New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria.

Authors:  J B Andersen; C Sternberg; L K Poulsen; S P Bjorn; M Givskov; S Molin
Journal:  Appl Environ Microbiol       Date:  1998-06       Impact factor: 4.792

6.  Conjugal transfer of DNA to cyanobacteria.

Authors:  J Elhai; C P Wolk
Journal:  Methods Enzymol       Date:  1988       Impact factor: 1.600

7.  Efficient gene transfer in Synechococcus sp. strains PCC 7942 and PCC 6301 by interspecies conjugation and chromosomal recombination.

Authors:  N F Tsinoremas; A K Kutach; C A Strayer; S S Golden
Journal:  J Bacteriol       Date:  1994-11       Impact factor: 3.490

8.  DNA photolyase homologs are the major UV resistance factors in the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  W O Ng; H B Pakrasi
Journal:  Mol Gen Genet       Date:  2001-02

9.  Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes.

Authors:  Jana Stöckel; Eric A Welsh; Michelle Liberton; Rangesh Kunnvakkam; Rajeev Aurora; Himadri B Pakrasi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-21       Impact factor: 11.205

10.  IMG: the Integrated Microbial Genomes database and comparative analysis system.

Authors:  Victor M Markowitz; I-Min A Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Biju Jacob; Jinghua Huang; Peter Williams; Marcel Huntemann; Iain Anderson; Konstantinos Mavromatis; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2012-01       Impact factor: 16.971
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  10 in total

1.  Improving the induction fold of riboregulators for cyanobacteria.

Authors:  Ippei Sakamoto; Koichi Abe; Sumiya Kawai; Kaori Tsukakoshi; Yuta Sakai; Koji Sode; Kazunori Ikebukuro
Journal:  RNA Biol       Date:  2018-02-01       Impact factor: 4.652

2.  Selectivity among Anti-σ Factors by Mycobacterium tuberculosis ClpX Influences Intracellular Levels of Extracytoplasmic Function σ Factors.

Authors:  Anuja C Joshi; Prabhjot Kaur; Radhika K Nair; Deepti S Lele; Vinay Kumar Nandicoori; Balasubramanian Gopal
Journal:  J Bacteriol       Date:  2019-02-25       Impact factor: 3.490

3.  Fine-Tuning of Photoautotrophic Protein Production by Combining Promoters and Neutral Sites in the Cyanobacterium Synechocystis sp. Strain PCC 6803.

Authors:  Andrew H Ng; Bertram M Berla; Himadri B Pakrasi
Journal:  Appl Environ Microbiol       Date:  2015-07-24       Impact factor: 4.792

4.  Progress and challenges in engineering cyanobacteria as chassis for light-driven biotechnology.

Authors:  Andrew Hitchcock; C Neil Hunter; Daniel P Canniffe
Journal:  Microb Biotechnol       Date:  2019-12-27       Impact factor: 5.813

Review 5.  Synthetic biology of cyanobacteria: unique challenges and opportunities.

Authors:  Bertram M Berla; Rajib Saha; Cheryl M Immethun; Costas D Maranas; Tae Seok Moon; Himadri B Pakrasi
Journal:  Front Microbiol       Date:  2013-08-27       Impact factor: 5.640

6.  Genetic tools for advancement of Synechococcus sp. PCC 7002 as a cyanobacterial chassis.

Authors:  Anne M Ruffing; Travis J Jensen; Lucas M Strickland
Journal:  Microb Cell Fact       Date:  2016-11-10       Impact factor: 5.328

Review 7.  Cyanobacteria as Chassis for Industrial Biotechnology: Progress and Prospects.

Authors:  Lamya Al-Haj; Yuen Tin Lui; Raeid M M Abed; Mohamed A Gomaa; Saul Purton
Journal:  Life (Basel)       Date:  2016-11-30

8.  Inducible CRISPR/Cas9 Allows for Multiplexed and Rapidly Segregated Single-Target Genome Editing in Synechocystis Sp. PCC 6803.

Authors:  Ivana Cengic; Inés C Cañadas; Nigel P Minton; Elton P Hudson
Journal:  ACS Synth Biol       Date:  2022-08-15       Impact factor: 5.249

Review 9.  Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory.

Authors:  Yi Yu; Le You; Dianyi Liu; Whitney Hollinshead; Yinjie J Tang; Fuzhong Zhang
Journal:  Mar Drugs       Date:  2013-08-13       Impact factor: 5.118

10.  Biosafety of biotechnologically important microalgae: intrinsic suicide switch implementation in cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Helena Čelešnik; Anja Tanšek; Aneja Tahirović; Angelika Vižintin; Jernej Mustar; Vita Vidmar; Marko Dolinar
Journal:  Biol Open       Date:  2016-04-15       Impact factor: 2.422
  10 in total

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