Literature DB >> 23395511

Intersubunit coordination and cooperativity in ring-shaped NTPases.

Ryota Iino1, Hiroyuki Noji.   

Abstract

Ring-shaped nucleoside triphosphatases (ring NTPases) are biological molecular machines powered by energy from NTP hydrolysis and are responsible for various cellular activities. These ring NTPases translocate their substrates or rotate their own subunits to/in the hole of the ring. Coordination and cooperativity among subunits in the oligomer ring is a topic of debate focused on understanding the operation mechanism of these protein machines. With the help of X-ray crystallographic structural analysis and optical microscopic single-molecules studies, distinct models, including stochastic, concerted, and rotary catalysis have been proposed. Here, we discuss these models and introduce high-speed atomic force microscopy as a new potent tool for verification of the model, with our recent example of the rotary catalysis of the stator ring of F1-adenosine triphosphatase.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23395511     DOI: 10.1016/j.sbi.2013.01.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  8 in total

1.  Mutations on the N-terminal edge of the DELSEED loop in either the α or β subunit of the mitochondrial F1-ATPase enhance ATP hydrolysis in the absence of the central γ rotor.

Authors:  Thuy La; George Desmond Clark-Walker; Xiaowen Wang; Stephan Wilkens; Xin Jie Chen
Journal:  Eukaryot Cell       Date:  2013-09-06

2.  Mechanical operation and intersubunit coordination of ring-shaped molecular motors: insights from single-molecule studies.

Authors:  Shixin Liu; Gheorghe Chistol; Carlos Bustamante
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

3.  A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills.

Authors:  Shixin Liu; Gheorghe Chistol; Craig L Hetherington; Sara Tafoya; K Aathavan; Joerg Schnitzbauer; Shelley Grimes; Paul J Jardine; Carlos Bustamante
Journal:  Cell       Date:  2014-04-24       Impact factor: 41.582

4.  The bacterial flagellar protein export apparatus processively transports flagellar proteins even with extremely infrequent ATP hydrolysis.

Authors:  Tohru Minamino; Yusuke V Morimoto; Miki Kinoshita; Phillip D Aldridge; Keiichi Namba
Journal:  Sci Rep       Date:  2014-12-22       Impact factor: 4.379

5.  Dynamic structural states of ClpB involved in its disaggregation function.

Authors:  Takayuki Uchihashi; Yo-Hei Watanabe; Yosuke Nakazaki; Takashi Yamasaki; Hiroki Watanabe; Takahiro Maruno; Kentaro Ishii; Susumu Uchiyama; Chihong Song; Kazuyoshi Murata; Ryota Iino; Toshio Ando
Journal:  Nat Commun       Date:  2018-06-01       Impact factor: 14.919

6.  Single-molecule analysis reveals rotational substeps and chemo-mechanical coupling scheme of Enterococcus hirae V1-ATPase.

Authors:  Tatsuya Iida; Yoshihiro Minagawa; Hiroshi Ueno; Fumihiro Kawai; Takeshi Murata; Ryota Iino
Journal:  J Biol Chem       Date:  2019-09-13       Impact factor: 5.157

7.  Bacterial rotary export ATPases are allosterically regulated by the nucleotide second messenger cyclic-di-GMP.

Authors:  Eleftheria Trampari; Clare E M Stevenson; Richard H Little; Thomas Wilhelm; David M Lawson; Jacob G Malone
Journal:  J Biol Chem       Date:  2015-08-11       Impact factor: 5.157

8.  Deciphering Intrinsic Inter-subunit Couplings that Lead to Sequential Hydrolysis of F1-ATPase Ring.

Authors:  Liqiang Dai; Holger Flechsig; Jin Yu
Journal:  Biophys J       Date:  2017-10-03       Impact factor: 4.033

  8 in total

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