Literature DB >> 23395329

Saccharomyces diversity and evolution: a budding model genus.

Chris Todd Hittinger1.   

Abstract

Saccharomyces cerevisiae is one of the best-understood and most powerful genetic model systems. Several disciplines are now converging to turn Saccharomyces into an exciting model genus for evolutionary genetics and genomics. Yeast taxonomists and ecologists have dramatically expanded and clarified Saccharomyces diversity, more than doubling the number of bona fide species since 2000. High-quality genome sequences are available (or soon will be) for all seven known species. Haploid laboratory strains are enabling a deep integration of classic genetic approaches with modern genomic tools. Population genomic surveys and quantitative trait mapping of variation within species are underway across the genus. Finally, several case studies have illuminated general and novel genetic mechanisms of evolution. Expanding strain collections, low-cost genome sequencing, and tools for precise genetic manipulation promise to usher in a golden era for this surprisingly diverse genus as an evolutionary model.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23395329     DOI: 10.1016/j.tig.2013.01.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  68 in total

Review 1.  Population perspectives on functional genomic variation in yeast.

Authors:  Daniel A Skelly; Paul M Magwene
Journal:  Brief Funct Genomics       Date:  2015-10-14       Impact factor: 4.241

2.  Dysbiosis of Gut Fungal Microbiota in Children with Autism Spectrum Disorders.

Authors:  Rong Zou; Yuezhu Wang; Mengmeng Duan; Min Guo; Qiang Zhang; Huajun Zheng
Journal:  J Autism Dev Disord       Date:  2021-01

3.  Effects of mutation and selection on plasticity of a promoter activity in Saccharomyces cerevisiae.

Authors:  Fabien Duveau; David C Yuan; Brian P H Metzger; Andrea Hodgins-Davis; Patricia J Wittkopp
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-19       Impact factor: 11.205

4.  Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.

Authors:  Xing-Xing Shen; Dana A Opulente; Jacek Kominek; Xiaofan Zhou; Jacob L Steenwyk; Kelly V Buh; Max A B Haase; Jennifer H Wisecaver; Mingshuang Wang; Drew T Doering; James T Boudouris; Rachel M Schneider; Quinn K Langdon; Moriya Ohkuma; Rikiya Endoh; Masako Takashima; Ri-Ichiroh Manabe; Neža Čadež; Diego Libkind; Carlos A Rosa; Jeremy DeVirgilio; Amanda Beth Hulfachor; Marizeth Groenewald; Cletus P Kurtzman; Chris Todd Hittinger; Antonis Rokas
Journal:  Cell       Date:  2018-11-08       Impact factor: 41.582

5.  Fermentation innovation through complex hybridization of wild and domesticated yeasts.

Authors:  Quinn K Langdon; David Peris; EmilyClare P Baker; Dana A Opulente; Huu-Vang Nguyen; Ursula Bond; Paula Gonçalves; José Paulo Sampaio; Diego Libkind; Chris Todd Hittinger
Journal:  Nat Ecol Evol       Date:  2019-10-21       Impact factor: 15.460

Review 6.  Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina).

Authors:  Bernard A Dujon; Edward J Louis
Journal:  Genetics       Date:  2017-06       Impact factor: 4.562

7.  Fungal evolution: cellular, genomic and metabolic complexity.

Authors:  Miguel A Naranjo-Ortiz; Toni Gabaldón
Journal:  Biol Rev Camb Philos Soc       Date:  2020-04-17

8.  Physiological and transcriptional responses of anaerobic chemostat cultures of Saccharomyces cerevisiae subjected to diurnal temperature cycles.

Authors:  Marit Hebly; Dick de Ridder; Erik A F de Hulster; Pilar de la Torre Cortes; Jack T Pronk; Pascale Daran-Lapujade
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

9.  Mitochondrial-nuclear epistasis contributes to phenotypic variation and coadaptation in natural isolates of Saccharomyces cerevisiae.

Authors:  Swati Paliwal; Anthony C Fiumera; Heather L Fiumera
Journal:  Genetics       Date:  2014-08-27       Impact factor: 4.562

10.  Identification of the fitness determinants of budding yeast on a natural substrate.

Authors:  Marie Filteau; Guillaume Charron; Christian R Landry
Journal:  ISME J       Date:  2016-12-09       Impact factor: 10.302

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