Literature DB >> 23389047

Glycopeptide analysis, recent developments and applications.

Heather Desaire1.   

Abstract

Glycopeptide-based analysis is used to inform researchers about the glycans on one or more proteins. The method's key attractive feature is its ability to link glycosylation information to exact locations (glycosylation sites) on proteins. Numerous applications for glycopeptide analysis are known, and several examples are described herein. The techniques used to characterize glycopeptides are still emerging, and recently, research focused on facilitating aspects of glycopeptide analysis has advanced significantly in the areas of sample preparation, MS fragmentation, and automation of data analysis. These recent developments, described herein, provide the foundation for the growth of glycopeptide analysis as a blossoming field.

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Year:  2013        PMID: 23389047      PMCID: PMC3617336          DOI: 10.1074/mcp.R112.026567

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  44 in total

1.  Analysis of recombinant human follicle-stimulating hormone (FSH) by mass spectrometric approaches.

Authors:  Josephine Grass; Martin Pabst; Martina Chang; Manfred Wozny; Friedrich Altmann
Journal:  Anal Bioanal Chem       Date:  2011-04-03       Impact factor: 4.142

2.  Simultaneous glycan-peptide characterization using hydrophilic interaction chromatography and parallel fragmentation by CID, higher energy collisional dissociation, and electron transfer dissociation MS applied to the N-linked glycoproteome of Campylobacter jejuni.

Authors:  Nichollas E Scott; Benjamin L Parker; Angela M Connolly; Jana Paulech; Alistair V G Edwards; Ben Crossett; Linda Falconer; Daniel Kolarich; Steven P Djordjevic; Peter Højrup; Nicolle H Packer; Martin R Larsen; Stuart J Cordwell
Journal:  Mol Cell Proteomics       Date:  2010-04-01       Impact factor: 5.911

3.  Characterizing protein glycosylation sites through higher-energy C-trap dissociation.

Authors:  Zaneer M Segu; Yehia Mechref
Journal:  Rapid Commun Mass Spectrom       Date:  2010-05-15       Impact factor: 2.419

4.  A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma.

Authors:  Penelope M Drake; Birgit Schilling; Richard K Niles; Miles Braten; Eric Johansen; Haichuan Liu; Michael Lerch; Dylan J Sorensen; Bensheng Li; Simon Allen; Steven C Hall; H Ewa Witkowska; Fred E Regnier; Bradford W Gibson; Susan J Fisher
Journal:  Anal Biochem       Date:  2010-08-10       Impact factor: 3.365

5.  Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues.

Authors:  Yan Li; Yuan Tian; Taha Rezai; Amol Prakash; Mary F Lopez; Daniel W Chan; Hui Zhang
Journal:  Anal Chem       Date:  2010-12-08       Impact factor: 6.986

6.  Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity.

Authors:  Anoop M Mayampurath; Yin Wu; Zaneer M Segu; Yehia Mechref; Haixu Tang
Journal:  Rapid Commun Mass Spectrom       Date:  2011-07-30       Impact factor: 2.419

7.  Ultrasensitive characterization of site-specific glycosylation of affinity-purified haptoglobin from lung cancer patient plasma using 10 μm i.d. porous layer open tubular liquid chromatography-linear ion trap collision-induced dissociation/electron transfer dissociation mass spectrometry.

Authors:  Dongdong Wang; Marina Hincapie; Tomas Rejtar; Barry L Karger
Journal:  Anal Chem       Date:  2011-02-21       Impact factor: 6.986

8.  Top-down sequencing of O-glycoproteins by in-source decay matrix-assisted laser desorption ionization mass spectrometry for glycosylation site analysis.

Authors:  Franz-Georg Hanisch
Journal:  Anal Chem       Date:  2011-05-13       Impact factor: 6.986

9.  Immunoglobulin G glycopeptide profiling by matrix-assisted laser desorption ionization Fourier transform ion cyclotron resonance mass spectrometry.

Authors:  Maurice H J Selman; Liam A McDonnell; Magnus Palmblad; L Renee Ruhaak; André M Deelder; Manfred Wuhrer
Journal:  Anal Chem       Date:  2010-02-01       Impact factor: 6.986

10.  GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA.

Authors:  Nandan Deshpande; Pia H Jensen; Nicolle H Packer; Daniel Kolarich
Journal:  J Proteome Res       Date:  2010-02-05       Impact factor: 4.466

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  34 in total

1.  The analysis of alpha-1-antitrypsin glycosylation with direct LC-MS/MS.

Authors:  Haidi Yin; Mingrui An; Pui-Kin So; Melody Yee-Man Wong; David M Lubman; Zhongping Yao
Journal:  Electrophoresis       Date:  2018-02-26       Impact factor: 3.535

2.  A comparison of energy-resolved vibrational activation/dissociation characteristics of protonated and sodiated high mannose N-glycopeptides.

Authors:  Forouzan Aboufazeli; Venkata Kolli; Eric D Dodds
Journal:  J Am Soc Mass Spectrom       Date:  2015-01-13       Impact factor: 3.109

Review 3.  A case for protein-level and site-level specificity in glycoproteomic studies of disease.

Authors:  Katherine N Schumacher; Eric D Dodds
Journal:  Glycoconj J       Date:  2016-03-23       Impact factor: 2.916

Review 4.  Antibody recognition of HIV and dengue glycoproteins.

Authors:  Isaac J Krauss
Journal:  Glycobiology       Date:  2016-03-03       Impact factor: 4.313

5.  N-linked Glycan Micro-heterogeneity in Glycoproteins of Arabidopsis.

Authors:  Wei Zeng; Kristina L Ford; Antony Bacic; Joshua L Heazlewood
Journal:  Mol Cell Proteomics       Date:  2017-12-13       Impact factor: 5.911

Review 6.  Algorithms and design strategies towards automated glycoproteomics analysis.

Authors:  Han Hu; Kshitij Khatri; Joseph Zaia
Journal:  Mass Spectrom Rev       Date:  2016-01-04       Impact factor: 10.946

7.  Label-free relative quantification of alpha-2-macroglobulin site-specific core-fucosylation in pancreatic cancer by LC-MS/MS.

Authors:  Zhenxin Lin; Haidi Yin; Andy Lo; Mack T Ruffin; Michelle A Anderson; Diane M Simeone; David M Lubman
Journal:  Electrophoresis       Date:  2013-12-27       Impact factor: 3.535

8.  Reliable determination of site-specific in vivo protein N-glycosylation based on collision-induced MS/MS and chromatographic retention time.

Authors:  Benlian Wang; Yaroslav Tsybovsky; Krzysztof Palczewski; Mark R Chance
Journal:  J Am Soc Mass Spectrom       Date:  2014-02-19       Impact factor: 3.109

9.  Glycoproteomic Analysis of Human Urinary Exosomes.

Authors:  Christopher J Brown; Stefan Gaunitz; Ziyu Wang; Lena Strindelius; Stephen C Jacobson; David E Clemmer; Jonathan C Trinidad; Milos V Novotny
Journal:  Anal Chem       Date:  2020-10-13       Impact factor: 6.986

10.  GlycoPep MassList: software to generate massive inclusion lists for glycopeptide analyses.

Authors:  Wenting Hu; Xiaomeng Su; Zhikai Zhu; Eden P Go; Heather Desaire
Journal:  Anal Bioanal Chem       Date:  2016-09-10       Impact factor: 4.142

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