Literature DB >> 2338714

Human DNA TATA boxes and transcription initiation sites. A statistical study.

F E Penotti1.   

Abstract

A statistical study of "TATA", or Hogness, boxes and transcription initiation sites in human DNA protein-coding genes is presented. The range over which the two signal sequences extend is assessed, and their information content is evaluated. The results are compared with those obtained from "general eukaryotic" samples (including sequences from various eukaryotic species and viruses). Statistically significant differences are found for both signals, and are especially noticeable for transcription initiation sites. The possibility that the latter may contain sufficient information to resolve the remaining ambiguity in the position of the transcription start point once a TATA box has been located is explored.

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Year:  1990        PMID: 2338714     DOI: 10.1016/S0022-2836(05)80120-2

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

1.  A branch point consensus from Arabidopsis found by non-circular analysis allows for better prediction of acceptor sites.

Authors:  N Tolstrup; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1997-08-01       Impact factor: 16.971

2.  In vitro transcription of baculovirus immediate early genes: accurate mRNA initiation by nuclear extracts from both insect and human cells.

Authors:  R R Hoopes; G F Rohrmann
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-15       Impact factor: 11.205

3.  High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.

Authors:  N D Herman; T D Schneider
Journal:  J Bacteriol       Date:  1992-06       Impact factor: 3.490

4.  Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal.

Authors:  N I Larsen; J Engelbrecht; S Brunak
Journal:  Nucleic Acids Res       Date:  1995-04-11       Impact factor: 16.971

Review 5.  Mucin genes: structure, expression and regulation.

Authors:  M Verma; E A Davidson
Journal:  Glycoconj J       Date:  1994-06       Impact factor: 2.916

6.  Two distinct factors bind to the rabbit uteroglobin TATA-box region and are required for efficient transcription.

Authors:  J Klug; S Knapp; I Castro; M Beato
Journal:  Mol Cell Biol       Date:  1994-09       Impact factor: 4.272

7.  Molecular structure of the human muscle-specific enolase gene (ENO3).

Authors:  M Peshavaria; I N Day
Journal:  Biochem J       Date:  1991-04-15       Impact factor: 3.857

8.  Promoter elements in Drosophila melanogaster revealed by sequence analysis.

Authors:  I R Arkhipova
Journal:  Genetics       Date:  1995-03       Impact factor: 4.562

9.  Anatomy of Escherichia coli sigma70 promoters.

Authors:  Ryan K Shultzaberger; Zehua Chen; Karen A Lewis; Thomas D Schneider
Journal:  Nucleic Acids Res       Date:  2006-12-22       Impact factor: 16.971

10.  Restriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences.

Authors:  Thomas D Schneider; Vishnu Jejjala
Journal:  PLoS One       Date:  2019-10-31       Impact factor: 3.240

  10 in total

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