Literature DB >> 23383940

Statistics of DNA capture by a solid-state nanopore.

Mirna Mihovilovic1, Nicholas Hagerty, Derek Stein.   

Abstract

A solid-state nanopore can electrophoretically capture a DNA molecule and pull it through in a folded configuration. The resulting ionic current signal indicates where along its length the DNA was captured. A statistical study using an 8-nm-wide nanopore reveals a strong bias favoring the capture of molecules near their ends. A theoretical model shows that bias to be a consequence of configurational entropy rather than a search by the polymer for an energetically favorable configuration. We also quantified the fluctuations and length dependence of the speed of simultaneously translocating polymer segments from our study of folded DNA configurations.

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Year:  2013        PMID: 23383940     DOI: 10.1103/PhysRevLett.110.028102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  20 in total

1.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

2.  DNA translocation through short nanofluidic channels under asymmetric pulsed electric field.

Authors:  C Gupta; W-C Liao; D Gallego-Perez; C E Castro; L J Lee
Journal:  Biomicrofluidics       Date:  2014-04-16       Impact factor: 2.800

3.  Direct observation of DNA knots using a solid-state nanopore.

Authors:  Calin Plesa; Daniel Verschueren; Sergii Pud; Jaco van der Torre; Justus W Ruitenberg; Menno J Witteveen; Magnus P Jonsson; Alexander Y Grosberg; Yitzhak Rabin; Cees Dekker
Journal:  Nat Nanotechnol       Date:  2016-08-15       Impact factor: 39.213

4.  Real-Time Nanopore-Based Recognition of Protein Translocation Success.

Authors:  David P Hoogerheide; Philip A Gurnev; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Biophys J       Date:  2018-01-12       Impact factor: 4.033

5.  Direction- and Salt-Dependent Ionic Current Signatures for DNA Sensing with Asymmetric Nanopores.

Authors:  Kaikai Chen; Nicholas A W Bell; Jinglin Kong; Yu Tian; Ulrich F Keyser
Journal:  Biophys J       Date:  2017-02-28       Impact factor: 4.033

6.  Monolayer WS2 Nanopores for DNA Translocation with Light-Adjustable Sizes.

Authors:  Gopinath Danda; Paul Masih Das; Yung-Chien Chou; Jerome T Mlack; William M Parkin; Carl H Naylor; Kazunori Fujisawa; Tianyi Zhang; Laura Beth Fulton; Mauricio Terrones; Alan T Charlie Johnson; Marija Drndić
Journal:  ACS Nano       Date:  2017-02-01       Impact factor: 15.881

7.  Temperature dependence of DNA translocations through solid-state nanopores.

Authors:  Daniel V Verschueren; Magnus P Jonsson; Cees Dekker
Journal:  Nanotechnology       Date:  2015-05-21       Impact factor: 3.874

8.  Non-equilibrium folding of individual DNA molecules recaptured up to 1000 times in a solid state nanopore.

Authors:  Calin Plesa; Ludo Cornelissen; Maarten W Tuijtel; Cees Dekker
Journal:  Nanotechnology       Date:  2013-10-31       Impact factor: 3.874

9.  Translocation frequency of double-stranded DNA through a solid-state nanopore.

Authors:  Nicholas A W Bell; Murugappan Muthukumar; Ulrich F Keyser
Journal:  Phys Rev E       Date:  2016-02-01       Impact factor: 2.529

10.  High-Fidelity Capture, Threading, and Infinite-Depth Sequencing of Single DNA Molecules with a Double-Nanopore System.

Authors:  Adnan Choudhary; Himanshu Joshi; Han-Yi Chou; Kumar Sarthak; James Wilson; Christopher Maffeo; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2020-11-11       Impact factor: 15.881

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