Literature DB >> 23381862

Preparing semisynthetic and fully synthetic histones h3 and h4 to modify the nucleosome core.

John C Shimko1, Cecil J Howard, Michael G Poirier, Jennifer J Ottesen.   

Abstract

The purpose of this chapter is to provide practical chemical ligation procedures to prepare histone proteins suitable for the reconstitution of nucleosomes with specific posttranslational modifications in the nucleosome core. Detailed methods are described for the efficient preparation of semisynthetic histones H3 and H4 with modifications near the C-terminus of the proteins by expressed protein ligation and desulfurization. Additionally, we present optimized protocols for solid phase peptide synthesis combined with sequential native chemical ligation to generate fully synthetic modified histone H3, here in the context of H3 lysine 56 acetylation (H3K56ac).

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Year:  2013        PMID: 23381862      PMCID: PMC3815671          DOI: 10.1007/978-1-62703-305-3_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  18 in total

1.  Protein synthesis by native chemical ligation: expanded scope by using straightforward methodology.

Authors:  T M Hackeng; J H Griffin; P E Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  The reduction of oxidized methionine residues in peptide thioesters with NH4I-Me2S.

Authors:  Christian P R Hackenberger
Journal:  Org Biomol Chem       Date:  2006-05-05       Impact factor: 3.876

3.  Free-radical-based, specific desulfurization of cysteine: a powerful advance in the synthesis of polypeptides and glycopolypeptides.

Authors:  Qian Wan; Samuel J Danishefsky
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding.

Authors:  Mridula Manohar; Alex M Mooney; Justin A North; Robin J Nakkula; Jonathan W Picking; Annick Edon; Richard Fishel; Michael G Poirier; Jennifer J Ottesen
Journal:  J Biol Chem       Date:  2009-06-11       Impact factor: 5.157

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  Chromatin structure; oligomers of the histones.

Authors:  R D Kornberg; J O Thomas
Journal:  Science       Date:  1974-05-24       Impact factor: 47.728

7.  Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomes.

Authors:  John C Shimko; Justin A North; Aaron N Bruns; Michael G Poirier; Jennifer J Ottesen
Journal:  J Mol Biol       Date:  2011-02-15       Impact factor: 5.469

8.  Nucleosome remodeling by hMSH2-hMSH6.

Authors:  Sarah Javaid; Mridula Manohar; Nidhi Punja; Alex Mooney; Jennifer J Ottesen; Michael G Poirier; Richard Fishel
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

9.  Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling.

Authors:  Justin A North; Sarah Javaid; Michelle B Ferdinand; Nilanjana Chatterjee; Jonathan W Picking; Matthew Shoffner; Robin J Nakkula; Blaine Bartholomew; Jennifer J Ottesen; Richard Fishel; Michael G Poirier
Journal:  Nucleic Acids Res       Date:  2011-05-16       Impact factor: 16.971

Review 10.  The tale beyond the tail: histone core domain modifications and the regulation of chromatin structure.

Authors:  Erica L Mersfelder; Mark R Parthun
Journal:  Nucleic Acids Res       Date:  2006-05-19       Impact factor: 16.971

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  11 in total

1.  Traceless semisynthesis of a set of histone 3 species bearing specific lysine methylation marks.

Authors:  Zhonglei Chen; Adrian T Grzybowski; Alexander J Ruthenburg
Journal:  Chembiochem       Date:  2014-08-22       Impact factor: 3.164

Review 2.  Chromatin regulation at the frontier of synthetic biology.

Authors:  Albert J Keung; J Keith Joung; Ahmad S Khalil; James J Collins
Journal:  Nat Rev Genet       Date:  2015-02-10       Impact factor: 53.242

3.  Histone core phosphorylation regulates DNA accessibility.

Authors:  Matthew Brehove; Tao Wang; Justin North; Yi Luo; Sarah J Dreher; John C Shimko; Jennifer J Ottesen; Karolin Luger; Michael G Poirier
Journal:  J Biol Chem       Date:  2015-07-13       Impact factor: 5.157

4.  Solid-Phase Peptide Capture and Release for Bulk and Single-Molecule Proteomics.

Authors:  Cecil J Howard; Brendan M Floyd; Angela M Bardo; Jagannath Swaminathan; Edward M Marcotte; Eric V Anslyn
Journal:  ACS Chem Biol       Date:  2020-05-14       Impact factor: 5.100

5.  Chemical and biological tools for the preparation of modified histone proteins.

Authors:  Cecil J Howard; Ruixuan R Yu; Miranda L Gardner; John C Shimko; Jennifer J Ottesen
Journal:  Top Curr Chem       Date:  2015

6.  Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF.

Authors:  Nilanjana Chatterjee; Justin A North; Mekonnen Lemma Dechassa; Mridula Manohar; Rashmi Prasad; Karolin Luger; Jennifer J Ottesen; Michael G Poirier; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2015-09-28       Impact factor: 4.272

7.  Hybrid phase ligation for efficient synthesis of histone proteins.

Authors:  Ruixuan R Yu; Santosh K Mahto; Kurt Justus; Mallory M Alexander; Cecil J Howard; Jennifer J Ottesen
Journal:  Org Biomol Chem       Date:  2016-03-07       Impact factor: 3.876

8.  Histone H3 phosphorylation near the nucleosome dyad alters chromatin structure.

Authors:  Justin A North; Marek Šimon; Michelle B Ferdinand; Matthew A Shoffner; Jonathan W Picking; Cecil J Howard; Alex M Mooney; John van Noort; Michael G Poirier; Jennifer J Ottesen
Journal:  Nucleic Acids Res       Date:  2014-02-21       Impact factor: 16.971

9.  Linker histone H1 and H3K56 acetylation are antagonistic regulators of nucleosome dynamics.

Authors:  Morgan Bernier; Yi Luo; Kingsley C Nwokelo; Michelle Goodwin; Sarah J Dreher; Pei Zhang; Mark R Parthun; Yvonne Fondufe-Mittendorf; Jennifer J Ottesen; Michael G Poirier
Journal:  Nat Commun       Date:  2015-12-09       Impact factor: 14.919

Review 10.  Replication-dependent histone isoforms: a new source of complexity in chromatin structure and function.

Authors:  Rajbir Singh; Emily Bassett; Arnab Chakravarti; Mark R Parthun
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

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