Literature DB >> 23381630

Looking for a promoter in 3D.

Vladimir Svetlov1, Evgeny Nudler.   

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Year:  2013        PMID： 23381630     DOI： 10.1038/nsmb.2498

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  31 in total

1.  Structural basis for promoter-10 element recognition by the bacterial RNA polymerase σ subunit.

Authors:  Andrey Feklistov; Seth A Darst
Journal:  Cell       Date:  2011-12-01       Impact factor: 41.582

2.  The elongation factor RfaH and the initiation factor sigma bind to the same site on the transcription elongation complex.

Authors:  Anastasiya Sevostyanova; Vladimir Svetlov; Dmitry G Vassylyev; Irina Artsimovitch
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-14       Impact factor: 11.205

3.  A global view of Escherichia coli Rsd protein and its interactions.

Authors:  Sarah E Piper; Jennie E Mitchell; David J Lee; Stephen J W Busby
Journal:  Mol Biosyst       Date:  2009-09-14

Review 4.  The interaction between bacterial transcription factors and RNA polymerase during the transition from initiation to elongation.

Authors:  Xiao Yang; Peter J Lewis
Journal:  Transcription       Date:  2010 Sep-Oct

5.  Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis.

Authors:  Ruth M Saecker; M Thomas Record; Pieter L Dehaseth
Journal:  J Mol Biol       Date:  2011-03-01       Impact factor: 5.469

Review 6.  Classes of fast and specific search mechanisms for proteins on DNA.

Authors:  M Sheinman; O Bénichou; Y Kafri; R Voituriez
Journal:  Rep Prog Phys       Date:  2012-01-24

7.  Extensive functional overlap between sigma factors in Escherichia coli.

Authors:  Joseph T Wade; Daniel Castro Roa; David C Grainger; Douglas Hurd; Stephen J W Busby; Kevin Struhl; Evgeny Nudler
Journal:  Nat Struct Mol Biol       Date:  2006-08-06       Impact factor: 15.369

8.  Visualization of single molecules of RNA polymerase sliding along DNA.

Authors:  H Kabata; O Kurosawa; I Arai; M Washizu; S A Margarson; R E Glass; N Shimamoto
Journal:  Science       Date:  1993-12-03       Impact factor: 47.728

9.  Effects of macromolecular crowding on genetic networks.

Authors:  Marco J Morelli; Rosalind J Allen; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

10.  Anatomy of Escherichia coli sigma70 promoters.

Authors:  Ryan K Shultzaberger; Zehua Chen; Karen A Lewis; Thomas D Schneider
Journal:  Nucleic Acids Res       Date:  2006-12-22       Impact factor: 16.971
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  3 in total

1.  The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites.

Authors:  Samuel A Isaacson; Carolyn A Larabell; Mark A Le Gros; David M McQueen; Charles S Peskin
Journal:  Bull Math Biol       Date:  2013-08-17       Impact factor: 1.758

Review 2.  Studying transcription initiation by RNA polymerase with diffusion-based single-molecule fluorescence.

Authors:  Yazan Alhadid; SangYoon Chung; Eitan Lerner; Dylan J Taatjes; Sergei Borukhov; Shimon Weiss
Journal:  Protein Sci       Date:  2017-04-02       Impact factor: 6.993

Review 3.  Impact of Chromosomal Architecture on the Function and Evolution of Bacterial Genomes.

Authors:  Thøger J Krogh; Jakob Møller-Jensen; Christoph Kaleta
Journal:  Front Microbiol       Date:  2018-08-27       Impact factor: 5.640
  3 in total

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