| Literature DB >> 23378732 |
Denize Atan1, Jarka Heissigerova, Lucia Kuffová, Aideen Hogan, Dara J Kilmartin, John V Forrester, Jeff L Bidwell, Andrew D Dick, Amanda J Churchill.
Abstract
PURPOSE: Idiopathic intermediate uveitis (IIU) is a potentially sight-threatening inflammatory disorder with well-defined anatomic diagnostic criteria. It is often associated with multiple sclerosis, and both conditions are linked to HLA-DRB1*15. Previously, we have shown that non-infectious uveitis (NIU) is associated with interleukin 10 (IL10) polymorphisms, IL10-2849A (rs6703630), IL10+434T (rs2222202), and IL10+504G (rs3024490), while a LTA+252AA/TNFA-238GG haplotype (rs909253/rs361525) is protective. In this study, we determined whether patients with IIU have a similar genetic profile as patients with NIU or multiple sclerosis.Entities:
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Year: 2013 PMID: 23378732 PMCID: PMC3559088
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Demographic information on recruited subjects
| Uveitis classification | Number in group | Age at recruitment (years) | Sex | ||
|---|---|---|---|---|---|
| Mean +/− SD | Range | Male | Female | ||
| IIU patients | 44 | 43.2 +/− 14.6 | 22–87 | 18 | 26 |
| Healthy controls | 92 | 48.9 +/− 16.9 | 21–89 | 27 | 65 |
| Comparison of IIU versus control groups | p=0.055 | p=0.182 | |||
The IIU and control cohorts were statistically similar in mean age, age range and sex distribution. The two groups were compared using the 2-tailed unpaired t test for age and 2-tailed X2 test for sex. Abbreviations: IIU, idiopathic intermediate uveitis; SD, standard deviation.
Associations between IIU and HLA, TNF and IL10 loci.
| Locus | Chromosome | X2 | Degrees of freedom | p value | pc value |
|---|---|---|---|---|---|
| 1 | 0.129 | 2 | 0.7195 | NS | |
| 1 | 1.186 | 2 | 0.2762 | NS | |
| 1 | 0.343 | 2 | 0.5579 | NS | |
| 1 | 0.426 | 2 | 0.5138 | NS | |
| 1 | 0.021 | 2 | 0.8850 | NS | |
| 1 | 0.004 | 2 | 0.9472 | NS | |
| 1 | 0.610 | 2 | 0.4346 | NS | |
| 6 | 2.992 | 2 | 0.0837 | NS | |
| 6 | 10.99 | 2 | 0.0009 | 0.0171 | |
| 6 | 11.54 | 2 | 0.0007 | 0.0133 | |
| 6 | 0.494 | 2 | 0.4821 | NS | |
| 6 | 1.688 | 10 | 0.8904 | NS | |
| 6 | 18.94 | 15 | 0.2165 | NS | |
| 6 | 13.15 | 12 | 0.3581 | NS | |
| 6 | 27.06 | 22 | 0.2088 | NS | |
| 6 | 0.001 | 1 | 0.9701 | NS | |
| 6 | 28.45 | 12 | 0.0048 | NS | |
| 6 | 1.194 | 3 | 0.7953 | NS | |
| 6 | 15.22 | 6 | 0.0254 | NS |
IIU is significantly associated with the TNFA-308 and TNFA-238 loci. There were associations with the HLA DRB1 and HLA DQB loci that lost significance after Bonferroni correction. Statistical analyses used the Likelihood ratio χ2 test in UNPHASED with 2-tailed probability values and Bonferroni correction for the number of loci (n=19). Abbreviations: NS, not significant with a p value>0.05; p value, uncorrected probability value; pc, Bonferroni corrected p value (pc=p x19); X2, Chi-square test.
Associations between IIU and the TNFA-308 and TNFA-238 loci are most compatible with an additive (allelic model)
| Locus | IIU patients | Healthy controls | X2 | Degrees of freedom | p value | pc value | Odds ratio for minor allele (95% CI) |
|---|---|---|---|---|---|---|---|
| Genotype frequency AA/AG/GG | 3/24/17 | 2/24/66 | 13.84 | 2 | 0.001 | 0.019 | - |
| Allele frequency A/G | 30/58 | 28/156 | 12.64 | 1 | 0.00038 | 0.0042 | 2.9 (1.6–5.2) |
Modeling the genetic association revealed an underlying allelic (additive) model with the minor alleles, TNFA-308A and TNFA-238A, associated with disease. Dominant and recessive models were not significant. Statistical analyses of genetic model used the Pearson X2 test with 2-tailed probability values in PLINK with Bonferroni correction for the number of loci (n=19). Genotype associations were determined using the Fisher exact test in SPSS with Bonferroni correction (n=19). Odds ratios were calculated in Open Epi. Abbreviations: p value, uncorrected probability value; pc, Bonferroni corrected p value (pc=p x11); X2, Chi-square test; CI, confidence intervals.
Association between combined TNFA-308 and TNFA −238 haplotypes with IIU
| Inferred frequency in IIU patients | Inferred frequency in controls | X2 | Degrees of freedom | p value | pc value | |
|---|---|---|---|---|---|---|
| GG | 0.509 | 0.804 | 24.31 | 1 | 0.000001 | 0.000004 |
| GA | 0.145 | 0.042 | 8.896 | 1 | 0.002858 | 0.011432 |
| AG | 0.312 | 0.152 | 9.132 | 1 | 0.002512 | 0.010048 |
| AA | 0.033 | 0.002 | 4.794 | 1 | 0.028560 | NS |
The combined TNFA-308G/-238G haplotype had a significant negative association with IIU, suggesting a protective effect against development of the disease. Two marker haplotypes were inferred in PLINK. Statistical analyses used the Pearson X2 test with 2-tailed probability values in PLINK with Bonferroni correction for the number of haplotypes (n=4). Abbreviations: %, percentage; IIU, idiopathic intermediate uveitis; p value, uncorrected probability value; pc value, Bonferroni corrected p value; NS, not significant with a p value>0.05.