Literature DB >> 23378595

The cystic fibrosis gene: a molecular genetic perspective.

Lap-Chee Tsui1, Ruslan Dorfman.   

Abstract

The positional cloning of the gene responsible for cystic fibrosis (CF) was the important first step in understanding the basic defect and pathophysiology of the disease. This study aims to provide a historical account of key developments as well as factors that contributed to the cystic fibrosis transmembrane conductance regulator (CFTR) gene identification work. A redefined gene structure based on the full sequence of the gene derived from the Human Genome Project is presented, along with brief reviews of the transcription regulatory sequences for the CFTR gene, the role of mRNA splicing in gene regulation and CF disease, and, various related sequences in the human genome and other species. Because CF mutations and genotype-phenotype correlations are covered by our colleagues (Ferec C, Cutting GR. 2012. Assessing the disease-liability of mutations in CFTR. Cold Spring Harb Perspect Med doi: 10.1101/cshperspect.a009480), we only attempt to provide an introduction of the CF mutation database here for reference purposes.

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Year:  2013        PMID: 23378595      PMCID: PMC3552342          DOI: 10.1101/cshperspect.a009472

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  103 in total

1.  Power tools for human genetics.

Authors:  Leonid Kruglyak
Journal:  Nat Genet       Date:  2005-12       Impact factor: 38.330

Review 2.  Sodium channels and cystic fibrosis.

Authors:  Scott H Donaldson; Richard C Boucher
Journal:  Chest       Date:  2007-11       Impact factor: 9.410

Review 3.  Transmembrane transport of endo- and xenobiotics by mammalian ATP-binding cassette multidrug resistance proteins.

Authors:  Roger G Deeley; Christopher Westlake; Susan P C Cole
Journal:  Physiol Rev       Date:  2006-07       Impact factor: 37.312

4.  Mutations in the beta-subunit of the epithelial Na+ channel in patients with a cystic fibrosis-like syndrome.

Authors:  Molly B Sheridan; Peying Fong; Joshua D Groman; Carol Conrad; Patrick Flume; Ruben Diaz; Christopher Harris; Michael Knowles; Garry R Cutting
Journal:  Hum Mol Genet       Date:  2005-10-05       Impact factor: 6.150

Review 5.  Cystic fibrosis mouse models.

Authors:  Claudine Guilbault; Zienab Saeed; Gregory P Downey; Danuta Radzioch
Journal:  Am J Respir Cell Mol Biol       Date:  2006-08-03       Impact factor: 6.914

Review 6.  The CFTR gene and regulation of its expression.

Authors:  Victoria A McCarthy; Ann Harris
Journal:  Pediatr Pulmonol       Date:  2005-07

7.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:  Ewan Birney; John A Stamatoyannopoulos; Anindya Dutta; Roderic Guigó; Thomas R Gingeras; Elliott H Margulies; Zhiping Weng; Michael Snyder; Emmanouil T Dermitzakis; Robert E Thurman; Michael S Kuehn; Christopher M Taylor; Shane Neph; Christoph M Koch; Saurabh Asthana; Ankit Malhotra; Ivan Adzhubei; Jason A Greenbaum; Robert M Andrews; Paul Flicek; Patrick J Boyle; Hua Cao; Nigel P Carter; Gayle K Clelland; Sean Davis; Nathan Day; Pawandeep Dhami; Shane C Dillon; Michael O Dorschner; Heike Fiegler; Paul G Giresi; Jeff Goldy; Michael Hawrylycz; Andrew Haydock; Richard Humbert; Keith D James; Brett E Johnson; Ericka M Johnson; Tristan T Frum; Elizabeth R Rosenzweig; Neerja Karnani; Kirsten Lee; Gregory C Lefebvre; Patrick A Navas; Fidencio Neri; Stephen C J Parker; Peter J Sabo; Richard Sandstrom; Anthony Shafer; David Vetrie; Molly Weaver; Sarah Wilcox; Man Yu; Francis S Collins; Job Dekker; Jason D Lieb; Thomas D Tullius; Gregory E Crawford; Shamil Sunyaev; William S Noble; Ian Dunham; France Denoeud; Alexandre Reymond; Philipp Kapranov; Joel Rozowsky; Deyou Zheng; Robert Castelo; Adam Frankish; Jennifer Harrow; Srinka Ghosh; Albin Sandelin; Ivo L Hofacker; Robert Baertsch; Damian Keefe; Sujit Dike; Jill Cheng; Heather A Hirsch; Edward A Sekinger; Julien Lagarde; Josep F Abril; Atif Shahab; Christoph Flamm; Claudia Fried; Jörg Hackermüller; Jana Hertel; Manja Lindemeyer; Kristin Missal; Andrea Tanzer; Stefan Washietl; Jan Korbel; Olof Emanuelsson; Jakob S Pedersen; Nancy Holroyd; Ruth Taylor; David Swarbreck; Nicholas Matthews; Mark C Dickson; Daryl J Thomas; Matthew T Weirauch; James Gilbert; Jorg Drenkow; Ian Bell; XiaoDong Zhao; K G Srinivasan; Wing-Kin Sung; Hong Sain Ooi; Kuo Ping Chiu; Sylvain Foissac; Tyler Alioto; Michael Brent; Lior Pachter; Michael L Tress; Alfonso Valencia; Siew Woh Choo; Chiou Yu Choo; Catherine Ucla; Caroline Manzano; Carine Wyss; Evelyn Cheung; Taane G Clark; James B Brown; Madhavan Ganesh; Sandeep Patel; Hari Tammana; Jacqueline Chrast; Charlotte N Henrichsen; Chikatoshi Kai; Jun Kawai; Ugrappa Nagalakshmi; Jiaqian Wu; Zheng Lian; Jin Lian; Peter Newburger; Xueqing Zhang; Peter Bickel; John S Mattick; Piero Carninci; Yoshihide Hayashizaki; Sherman Weissman; Tim Hubbard; Richard M Myers; Jane Rogers; Peter F Stadler; Todd M Lowe; Chia-Lin Wei; Yijun Ruan; Kevin Struhl; Mark Gerstein; Stylianos E Antonarakis; Yutao Fu; Eric D Green; Ulaş Karaöz; Adam Siepel; James Taylor; Laura A Liefer; Kris A Wetterstrand; Peter J Good; Elise A Feingold; Mark S Guyer; Gregory M Cooper; George Asimenos; Colin N Dewey; Minmei Hou; Sergey Nikolaev; Juan I Montoya-Burgos; Ari Löytynoja; Simon Whelan; Fabio Pardi; Tim Massingham; Haiyan Huang; Nancy R Zhang; Ian Holmes; James C Mullikin; Abel Ureta-Vidal; Benedict Paten; Michael Seringhaus; Deanna Church; Kate Rosenbloom; W James Kent; Eric A Stone; Serafim Batzoglou; Nick Goldman; Ross C Hardison; David Haussler; Webb Miller; Arend Sidow; Nathan D Trinklein; Zhengdong D Zhang; Leah Barrera; Rhona Stuart; David C King; Adam Ameur; Stefan Enroth; Mark C Bieda; Jonghwan Kim; Akshay A Bhinge; Nan Jiang; Jun Liu; Fei Yao; Vinsensius B Vega; Charlie W H Lee; Patrick Ng; Atif Shahab; Annie Yang; Zarmik Moqtaderi; Zhou Zhu; Xiaoqin Xu; Sharon Squazzo; Matthew J Oberley; David Inman; Michael A Singer; Todd A Richmond; Kyle J Munn; Alvaro Rada-Iglesias; Ola Wallerman; Jan Komorowski; Joanna C Fowler; Phillippe Couttet; Alexander W Bruce; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; David A Nix; Ghia Euskirchen; Stephen Hartman; Alexander E Urban; Peter Kraus; Sara Van Calcar; Nate Heintzman; Tae Hoon Kim; Kun Wang; Chunxu Qu; Gary Hon; Rosa Luna; Christopher K Glass; M Geoff Rosenfeld; Shelley Force Aldred; Sara J Cooper; Anason Halees; Jane M Lin; Hennady P Shulha; Xiaoling Zhang; Mousheng Xu; Jaafar N S Haidar; Yong Yu; Yijun Ruan; Vishwanath R Iyer; Roland D Green; Claes Wadelius; Peggy J Farnham; Bing Ren; Rachel A Harte; Angie S Hinrichs; Heather Trumbower; Hiram Clawson; Jennifer Hillman-Jackson; Ann S Zweig; Kayla Smith; Archana Thakkapallayil; Galt Barber; Robert M Kuhn; Donna Karolchik; Lluis Armengol; Christine P Bird; Paul I W de Bakker; Andrew D Kern; Nuria Lopez-Bigas; Joel D Martin; Barbara E Stranger; Abigail Woodroffe; Eugene Davydov; Antigone Dimas; Eduardo Eyras; Ingileif B Hallgrímsdóttir; Julian Huppert; Michael C Zody; Gonçalo R Abecasis; Xavier Estivill; Gerard G Bouffard; Xiaobin Guan; Nancy F Hansen; Jacquelyn R Idol; Valerie V B Maduro; Baishali Maskeri; Jennifer C McDowell; Morgan Park; Pamela J Thomas; Alice C Young; Robert W Blakesley; Donna M Muzny; Erica Sodergren; David A Wheeler; Kim C Worley; Huaiyang Jiang; George M Weinstock; Richard A Gibbs; Tina Graves; Robert Fulton; Elaine R Mardis; Richard K Wilson; Michele Clamp; James Cuff; Sante Gnerre; David B Jaffe; Jean L Chang; Kerstin Lindblad-Toh; Eric S Lander; Maxim Koriabine; Mikhail Nefedov; Kazutoyo Osoegawa; Yuko Yoshinaga; Baoli Zhu; Pieter J de Jong
Journal:  Nature       Date:  2007-06-14       Impact factor: 49.962

8.  CTCF mediates insulator function at the CFTR locus.

Authors:  Neil P Blackledge; Emma J Carter; Joanne R Evans; Victoria Lawson; Rebecca K Rowntree; Ann Harris
Journal:  Biochem J       Date:  2007-12-01       Impact factor: 3.857

9.  PhenCode: connecting ENCODE data with mutations and phenotype.

Authors:  Belinda Giardine; Cathy Riemer; Tim Hefferon; Daryl Thomas; Fan Hsu; Julian Zielenski; Yunhua Sang; Laura Elnitski; Garry Cutting; Heather Trumbower; Andrew Kern; Robert Kuhn; George P Patrinos; Jim Hughes; Doug Higgs; David Chui; Charles Scriver; Manyphong Phommarinh; Santosh K Patnaik; Olga Blumenfeld; Bruce Gottlieb; Mauno Vihinen; Jouni Väliaho; Jim Kent; Webb Miller; Ross C Hardison
Journal:  Hum Mutat       Date:  2007-06       Impact factor: 4.878

10.  Reduced splicing efficiency induced by synonymous substitutions may generate a substrate for natural selection of new splicing isoforms: the case of CFTR exon 12.

Authors:  Michela Raponi; Francisco E Baralle; Franco Pagani
Journal:  Nucleic Acids Res       Date:  2006-12-15       Impact factor: 16.971

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  24 in total

1.  Whole-gene CFTR sequencing combined with digital RT-PCR improves genetic diagnosis of cystic fibrosis.

Authors:  Letizia Straniero; Giulia Soldà; Lucy Costantino; Manuela Seia; Paola Melotti; Carla Colombo; Rosanna Asselta; Stefano Duga
Journal:  J Hum Genet       Date:  2016-08-04       Impact factor: 3.172

Review 2.  Innovative Therapies for Cystic Fibrosis: The Road from Treatment to Cure.

Authors:  Giulio Cabrini
Journal:  Mol Diagn Ther       Date:  2019-04       Impact factor: 4.074

3.  Whole-Genome Sequencing of Finnish Type 1 Diabetic Siblings Discordant for Kidney Disease Reveals DNA Variants associated with Diabetic Nephropathy.

Authors:  Jing Guo; Owen J L Rackham; Niina Sandholm; Bing He; Anne-May Österholm; Erkka Valo; Valma Harjutsalo; Carol Forsblom; Iiro Toppila; Maija Parkkonen; Qibin Li; Wenjuan Zhu; Nathan Harmston; Sonia Chothani; Miina K Öhman; Eudora Eng; Yang Sun; Enrico Petretto; Per-Henrik Groop; Karl Tryggvason
Journal:  J Am Soc Nephrol       Date:  2020-01-09       Impact factor: 10.121

4.  A retrospective cohort analysis of the Yale pediatric genomics discovery program.

Authors:  Samir Al-Ali; Lauren Jeffries; E Vincent S Faustino; Weizhen Ji; Emily Mis; Monica Konstantino; Cynthia Zerillo; Yong-Hui Jiang; Michele Spencer-Manzon; Allen Bale; Hui Zhang; Julie McGlynn; James M McGrath; Thierry Tremblay; Nina N Brodsky; Carrie L Lucas; Richard Pierce; Engin Deniz; Mustafa K Khokha; Saquib A Lakhani
Journal:  Am J Med Genet A       Date:  2022-07-28       Impact factor: 2.578

5.  Molecular Epidemiology of Mutations in Antimicrobial Resistance Loci of Pseudomonas aeruginosa Isolates from Airways of Cystic Fibrosis Patients.

Authors:  Leonie Greipel; Sebastian Fischer; Jens Klockgether; Marie Dorda; Samira Mielke; Lutz Wiehlmann; Nina Cramer; Burkhard Tümmler
Journal:  Antimicrob Agents Chemother       Date:  2016-10-21       Impact factor: 5.191

Review 6.  RNA mis-splicing in disease.

Authors:  Marina M Scotti; Maurice S Swanson
Journal:  Nat Rev Genet       Date:  2015-11-23       Impact factor: 53.242

7.  Screening for Regulatory Variants in 460 kb Encompassing the CFTR Locus in Cystic Fibrosis Patients.

Authors:  Jenny L Kerschner; Sujana Ghosh; Alekh Paranjapye; Wilmel R Cosme; Marie-Pierre Audrézet; Miyuki Nakakuki; Hiroshi Ishiguro; Claude Férec; Johanna Rommens; Ann Harris
Journal:  J Mol Diagn       Date:  2018-10-05       Impact factor: 5.568

Review 8.  Molecular basis of cystic fibrosis: from bench to bedside.

Authors:  Maria Cristina Dechecchi; Anna Tamanini; Giulio Cabrini
Journal:  Ann Transl Med       Date:  2018-09

9.  Prenatal Ultrasound Suspicion of Cystic Fibrosis in a Multiethnic Population: Is Extensive CFTR Genotyping Needed?

Authors:  Chadia Mekki; Abdel Aissat; Véronique Mirlesse; Sophie Mayer Lacrosniere; Elsa Eche; Annick Le Floch; Sandra Whalen; Cecile Prud'Homme; Christelle Remus; Benoit Funalot; Vanina Castaigne; Pascale Fanen; Alix de Becdelièvre
Journal:  Genes (Basel)       Date:  2021-04-29       Impact factor: 4.096

10.  Complex consequences of Cantu syndrome SUR2 variant R1154Q in genetically modified mice.

Authors:  Haixia Zhang; Alex Hanson; Tobias Scherf de Almeida; Christopher Emfinger; Conor McClenaghan; Theresa Harter; Zihan Yan; Paige E Cooper; G Schuyler Brown; Eric C Arakel; Robert P Mecham; Atilla Kovacs; Carmen M Halabi; Blanche Schwappach; Maria S Remedi; Colin G Nichols
Journal:  JCI Insight       Date:  2021-03-08
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