Literature DB >> 23377569

Crowdsourcing in proteomics: public resources lead to better experiments.

Harald Barsnes1, Lennart Martens.   

Abstract

With the growing interest in the field of proteomics, the amount of publicly available proteome resources has also increased dramatically. This means that there are many useful resources available for almost all aspects of a proteomics experiment. However, it remains vital to use the right resource, for the right purpose, at the right time. This review is therefore meant to aid the reader in obtaining an overview of the available resources and their application, thus providing the necessary background to choose the appropriate resources for the experiment at hand. Many of the resources are also taking advantage of so-called crowdsourcing to maximize the potential of the resource. What this means and how this can improve future experiments will also be discussed. The text roughly follows the steps involved in a proteomics experiment, starting with the planning of the experiment, via the processing of the data and the analysis of the results, to the community-wide sharing of the produced data.

Mesh:

Year:  2013        PMID: 23377569     DOI: 10.1007/s00726-012-1455-z

Source DB:  PubMed          Journal:  Amino Acids        ISSN: 0939-4451            Impact factor:   3.520


  5 in total

1.  CSF-PR 2.0: An Interactive Literature Guide to Quantitative Cerebrospinal Fluid Mass Spectrometry Data from Neurodegenerative Disorders.

Authors:  Astrid Guldbrandsen; Yehia Farag; Ann Cathrine Kroksveen; Eystein Oveland; Ragnhild R Lereim; Jill A Opsahl; Kjell-Morten Myhr; Frode S Berven; Harald Barsnes
Journal:  Mol Cell Proteomics       Date:  2016-11-27       Impact factor: 5.911

2.  Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning--a word of caution.

Authors:  Erik Helgeland; Lars Ertesvåg Breivik; Marc Vaudel; Øyvind Sverre Svendsen; Hilde Garberg; Jan Erik Nordrehaug; Frode Steingrimsen Berven; Anne Kristine Jonassen
Journal:  PLoS One       Date:  2014-10-15       Impact factor: 3.240

Review 3.  Exploring the potential of public proteomics data.

Authors:  Marc Vaudel; Kenneth Verheggen; Attila Csordas; Helge Raeder; Frode S Berven; Lennart Martens; Juan A Vizcaíno; Harald Barsnes
Journal:  Proteomics       Date:  2015-12-15       Impact factor: 3.984

4.  Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics.

Authors:  Lennart Martens
Journal:  EuPA Open Proteom       Date:  2016-03-28

5.  Entrepreneurial orientation, technological propensity and academic research productivity.

Authors:  Asaf Rubin; Chris William Callaghan
Journal:  Heliyon       Date:  2019-08-31
  5 in total

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