Literature DB >> 23376345

Elimination and utilization of oxidized guanine nucleotides in the synthesis of RNA and its precursors.

Takeshi Sekiguchi1, Riyoko Ito, Hiroshi Hayakawa, Mutsuo Sekiguchi.   

Abstract

Reactive oxygen species are produced as side products of oxygen utilization and can lead to the oxidation of nucleic acids and their precursor nucleotides. Among the various oxidized bases, 8-oxo-7,8-dihydroguanine seems to be the most critical during the transfer of genetic information because it can pair with both cytosine and adenine. During the de novo synthesis of guanine nucleotides, GMP is formed first, and it is converted to GDP by guanylate kinase. This enzyme hardly acts on an oxidized form of GMP (8-oxo-GMP) formed by the oxidation of GMP or by the cleavage of 8-oxo-GDP and 8-oxo-GTP by MutT protein. Although the formation of 8-oxo-GDP from 8-oxo-GMP is thus prevented, 8-oxo-GDP itself may be produced by the oxidation of GDP by reactive oxygen species. The 8-oxo-GDP thus formed can be converted to 8-oxo-GTP because nucleoside-diphosphate kinase and adenylate kinase, both of which catalyze the conversion of GDP to GTP, do not discriminate 8-oxo-GDP from normal GDP. The 8-oxo-GTP produced in this way and by the oxidation of GTP can be used for RNA synthesis. This misincorporation is prevented by MutT protein, which has the potential to cleave 8-oxo-GTP as well as 8-oxo-GDP to 8-oxo-GMP. When (14)C-labeled 8-oxo-GTP was applied to CaCl2-permeabilized cells of a mutT(-) mutant strain, it could be incorporated into RNA at 4% of the rate for GTP. Escherichia coli cells appear to possess mechanisms to prevent misincorporation of 8-oxo-7,8-dihydroguanine into RNA.

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Year:  2013        PMID: 23376345      PMCID: PMC3605631          DOI: 10.1074/jbc.M112.418723

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  25 in total

Review 1.  Pathways of oxidative damage.

Authors:  James A Imlay
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

Review 2.  Mutagenicity, toxicity and repair of DNA base damage induced by oxidation.

Authors:  Svein Bjelland; Erling Seeberg
Journal:  Mutat Res       Date:  2003-10-29       Impact factor: 2.433

3.  Purification and properties of guanylate kinase from Escherichia coli.

Authors:  M P Oeschger; M J Bessman
Journal:  J Biol Chem       Date:  1966-11-25       Impact factor: 5.157

4.  Human MTH1 protein hydrolyzes the oxidized ribonucleotide, 2-hydroxy-ATP.

Authors:  K Fujikawa; H Kamiya; H Yakushiji; Y Nakabeppu; H Kasai
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

5.  Human MTH3 (NUDT18) protein hydrolyzes oxidized forms of guanosine and deoxyguanosine diphosphates: comparison with MTH1 and MTH2.

Authors:  Yasumitsu Takagi; Daiki Setoyama; Riyoko Ito; Hiroyuki Kamiya; Yuriko Yamagata; Mutsuo Sekiguchi
Journal:  J Biol Chem       Date:  2012-05-03       Impact factor: 5.157

6.  Interactions among the Escherichia coli mutT, mutM, and mutY damage prevention pathways.

Authors:  Robert G Fowler; Steven J White; Carol Koyama; Sean C Moore; Ronnie L Dunn; Roel M Schaaper
Journal:  DNA Repair (Amst)       Date:  2003-02-03

7.  Nucleoside diphosphate kinase from Escherichia coli; its overproduction and sequence comparison with eukaryotic enzymes.

Authors:  H Hama; N Almaula; C G Lerner; S Inouye; M Inouye
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8.  MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis.

Authors:  H Maki; M Sekiguchi
Journal:  Nature       Date:  1992-01-16       Impact factor: 49.962

9.  Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA.

Authors:  M L Michaels; C Cruz; A P Grollman; J H Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1992-08-01       Impact factor: 11.205

10.  Misreading of DNA templates containing 8-hydroxydeoxyguanosine at the modified base and at adjacent residues.

Authors:  Y Kuchino; F Mori; H Kasai; H Inoue; S Iwai; K Miura; E Ohtsuka; S Nishimura
Journal:  Nature       Date:  1987 May 7-13       Impact factor: 49.962

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  11 in total

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Authors:  Zhijie Xu; Jinzhou Huang; Ming Gao; Guijie Guo; Shuangshuang Zeng; Xi Chen; Xiang Wang; Zhicheng Gong; Yuanliang Yan
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2.  Search for proteins required for accurate gene expression under oxidative stress: roles of guanylate kinase and RNA polymerase.

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Journal:  J Biol Chem       Date:  2013-10-04       Impact factor: 5.157

3.  Nucleoside Diphosphate Kinase Escalates A-to-C Mutations in MutT-Deficient Strains of Escherichia coli.

Authors:  Indu Kapoor; Elhassan Ali Fathi Emam; Abhirup Shaw; Umesh Varshney
Journal:  J Bacteriol       Date:  2019-12-06       Impact factor: 3.490

Review 4.  Biology of aging: Oxidative stress and RNA oxidation.

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Review 5.  Battle against RNA oxidation: molecular mechanisms for reducing oxidized RNA to protect cells.

Authors:  Zhongwei Li; Sulochan Malla; Brian Shin; James M Li
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-16       Impact factor: 9.957

6.  Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity.

Authors:  Alasdair J E Gordon; Dominik Satory; Mengyu Wang; Jennifer A Halliday; Ido Golding; Christophe Herman
Journal:  Nucleic Acids Res       Date:  2014-10-07       Impact factor: 16.971

7.  Hydrogen peroxide-triggered gene silencing in mammalian cells through boronated antisense oligonucleotides.

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Journal:  Chem Sci       Date:  2017-12-06       Impact factor: 9.825

8.  Structural Determinants Responsible for the Preferential Insertion of Ribonucleotides by Bacterial NHEJ PolDom.

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Journal:  Biomolecules       Date:  2020-01-30

9.  Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide.

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Journal:  Nat Commun       Date:  2021-04-06       Impact factor: 14.919

10.  Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics.

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Journal:  Mol Cell Proteomics       Date:  2013-09-16       Impact factor: 5.911

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