Literature DB >> 23370481

Automated segmentation of multiple red blood cells with digital holographic microscopy.

Faliu Yi1, Inkyu Moon, Bahram Javidi, Daniel Boss, Pierre Marquet.   

Abstract

We present a method to automatically segment red blood cells (RBCs) visualized by digital holographic microscopy (DHM), which is based on the marker-controlled watershed algorithm. Quantitative phase images of RBCs can be obtained by using off-axis DHM along to provide some important information about each RBC, including size, shape, volume, hemoglobin content, etc. The most important process of segmentation based on marker-controlled watershed is to perform an accurate localization of internal and external markers. Here, we first obtain the binary image via Otsu algorithm. Then, we apply morphological operations to the binary image to get the internal markers. We then apply the distance transform algorithm combined with the watershed algorithm to generate external markers based on internal markers. Finally, combining the internal and external markers, we modify the original gradient image and apply the watershed algorithm. By appropriately identifying the internal and external markers, the problems of oversegmentation and undersegmentation are avoided. Furthermore, the internal and external parts of the RBCs phase image can also be segmented by using the marker-controlled watershed combined with our method, which can identify the internal and external markers appropriately. Our experimental results show that the proposed method achieves good performance in terms of segmenting RBCs and could thus be helpful when combined with an automated classification of RBCs.

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Year:  2013        PMID: 23370481     DOI: 10.1117/1.JBO.18.2.026006

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  11 in total

1.  Extraction of target specimens from bioholographic images using interactive graph cuts.

Authors:  Faliu Yi; Inkyu Moon; Yeon H Lee
Journal:  J Biomed Opt       Date:  2013-12       Impact factor: 3.170

Review 2.  Review of quantitative phase-digital holographic microscopy: promising novel imaging technique to resolve neuronal network activity and identify cellular biomarkers of psychiatric disorders.

Authors:  Pierre Marquet; Christian Depeursinge; Pierre J Magistretti
Journal:  Neurophotonics       Date:  2014-09-22       Impact factor: 3.593

3.  Erythrocyte shape classification using integral-geometry-based methods.

Authors:  X Gual-Arnau; S Herold-García; A Simó
Journal:  Med Biol Eng Comput       Date:  2015-03-13       Impact factor: 2.602

4.  Cell morphology-based classification of red blood cells using holographic imaging informatics.

Authors:  Faliu Yi; Inkyu Moon; Bahram Javidi
Journal:  Biomed Opt Express       Date:  2016-05-25       Impact factor: 3.732

5.  Role of pH level on the morphology and growth rate of myelin figures.

Authors:  Marzieh Allah Panahi; Zahra Tahmasebi; Vahid Abbasian; Mohammad Amiri; Ali-Reza Moradi
Journal:  Biomed Opt Express       Date:  2020-09-15       Impact factor: 3.732

6.  Automated red blood cells extraction from holographic images using fully convolutional neural networks.

Authors:  Faliu Yi; Inkyu Moon; Bahram Javidi
Journal:  Biomed Opt Express       Date:  2017-09-12       Impact factor: 3.732

7.  Microscopic images dataset for automation of RBCs counting.

Authors:  Sherif Abbas
Journal:  Data Brief       Date:  2015-08-20

8.  Automatic extraction of cell nuclei from H&E-stained histopathological images.

Authors:  Faliu Yi; Junzhou Huang; Lin Yang; Yang Xie; Guanghua Xiao
Journal:  J Med Imaging (Bellingham)       Date:  2017-06-21

9.  Spectroscopic Evaluation of Red Blood Cells of Thalassemia Patients with Confocal Microscopy: A Pilot Study.

Authors:  Laura Rey-Barroso; Mónica Roldán; Francisco J Burgos-Fernández; Susanna Gassiot; Anna Ruiz Llobet; Ignacio Isola; Meritxell Vilaseca
Journal:  Sensors (Basel)       Date:  2020-07-21       Impact factor: 3.576

10.  Robust microbial cell segmentation by optical-phase thresholding with minimal processing requirements.

Authors:  H Alanazi; A J Canul; A Garman; J Quimby; A E Vasdekis
Journal:  Cytometry A       Date:  2017-03-30       Impact factor: 4.355

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