Literature DB >> 23369829

Drug target inference through pathway analysis of genomics data.

Haisu Ma1, Hongyu Zhao.   

Abstract

Statistical modeling coupled with bioinformatics is commonly used for drug discovery. Although there exist many approaches for single target based drug design and target inference, recent years have seen a paradigm shift to system-level pharmacological research. Pathway analysis of genomics data represents one promising direction for computational inference of drug targets. This article aims at providing a comprehensive review on the evolving issues in this field, covering methodological developments, their pros and cons, as well as future research directions.
Copyright © 2013 Elsevier B.V. All rights reserved.

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Year:  2013        PMID: 23369829      PMCID: PMC3672337          DOI: 10.1016/j.addr.2012.12.004

Source DB:  PubMed          Journal:  Adv Drug Deliv Rev        ISSN: 0169-409X            Impact factor:   15.470


  56 in total

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Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
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9.  Transcriptome sequencing to detect gene fusions in cancer.

Authors:  Christopher A Maher; Chandan Kumar-Sinha; Xuhong Cao; Shanker Kalyana-Sundaram; Bo Han; Xiaojun Jing; Lee Sam; Terrence Barrette; Nallasivam Palanisamy; Arul M Chinnaiyan
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10.  Graph-based iterative Group Analysis enhances microarray interpretation.

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Journal:  BMC Bioinformatics       Date:  2004-07-23       Impact factor: 3.169

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  3 in total

1.  Efficient Drug-Pathway Association Analysis via Integrative Penalized Matrix Decomposition.

Authors:  Cong Li; Can Yang; Greg Hather; Ray Liu; Hongyu Zhao
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2016 May-Jun       Impact factor: 3.710

2.  Identifying drug-pathway association pairs based on L1L2,1-integrative penalized matrix decomposition.

Authors:  Dong-Qin Wang; Ying-Lian Gao; Jin-Xing Liu; Chun-Hou Zheng; Xiang-Zhen Kong
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Journal:  BMC Syst Biol       Date:  2017-12-14
  3 in total

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