Literature DB >> 23368388

Capstan friction model for DNA ejection from bacteriophages.

Sandip Ghosal1.   

Abstract

Bacteriophages infect cells by attaching to the outer membrane and injecting their DNA into the cell. The phage DNA is then transcribed by the cell's transcription machinery. A number of physical mechanisms by which DNA can be translocated from the phage capsid into the cell have been identified. A fast ejection driven by the elastic and electrostatic potential energy of the compacted DNA within the viral capsid appears to be used by most phages, at least to initiate infection. In recent in vitro experiments, the speed of DNA translocation from a λ phage capsid has been measured as a function of ejected length over the entire duration of the event. Here, a mechanical model is proposed that is able to explain the observed dependence of exit velocity on ejected length, and that is also consistent with the accepted picture of the geometric arrangement of DNA within the viral capsid.

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Year:  2012        PMID: 23368388      PMCID: PMC3707003          DOI: 10.1103/PhysRevLett.109.248105

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  19 in total

1.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

2.  The structure of isometric capsids of bacteriophage T4.

Authors:  N H Olson; M Gingery; F A Eiserling; T S Baker
Journal:  Virology       Date:  2001-01-20       Impact factor: 3.616

3.  Forces during bacteriophage DNA packaging and ejection.

Authors:  Prashant K Purohit; Mandar M Inamdar; Paul D Grayson; Todd M Squires; Jané Kondev; Rob Phillips
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

Review 4.  Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it?

Authors:  Ian J Molineux
Journal:  Virology       Date:  2006-01-05       Impact factor: 3.616

5.  Electrophoresis of a polyelectrolyte through a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-10-02

6.  Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev Lett       Date:  2007-06-07       Impact factor: 9.161

Review 7.  Is phage DNA 'injected' into cells--biologists and physicists can agree.

Authors:  Paul Grayson; Ian J Molineux
Journal:  Curr Opin Microbiol       Date:  2007-08-21       Impact factor: 7.934

8.  Encapsidated conformation of bacteriophage T7 DNA.

Authors:  M E Cerritelli; N Cheng; A H Rosenberg; C E McPherson; F P Booy; A C Steven
Journal:  Cell       Date:  1997-10-17       Impact factor: 41.582

9.  DNA arrangement in isometric phage heads.

Authors:  W C Earnshaw; S C Harrison
Journal:  Nature       Date:  1977-08-18       Impact factor: 49.962

10.  Electro-osmotic screening of the DNA charge in a nanopore.

Authors:  Binquan Luan; Aleksei Aksimentiev
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-08-26
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  2 in total

1.  Discontinuous growth of DNA plectonemes due to atomic scale friction.

Authors:  Yifei Min; Prashant K Purohit
Journal:  Soft Matter       Date:  2018-09-26       Impact factor: 3.679

2.  Asymmetric dynamics of DNA entering and exiting a strongly confining nanopore.

Authors:  Nicholas A W Bell; Kaikai Chen; Sandip Ghosal; Maria Ricci; Ulrich F Keyser
Journal:  Nat Commun       Date:  2017-08-30       Impact factor: 14.919

  2 in total

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