Literature DB >> 23367175

Modeling spatial population dynamics of stem cell lineage in tissue growth.

Youfang Cao1, Claire Liang, Hammad Naveed, Yingzi Li, Meng Chen, Qing Nie.   

Abstract

Understanding the dynamics of cell population allows insight into the control mechanism of the growth and development of mammalian tissues. It is well known that the proliferation and differentiation among stem cells (SCs), intermediate progenitor cells (IPCs), and fully differentiated cells (FDCs) are under different activation and inhibition controls. Secreted factors in negative feedback loops have already been identified as major elements in regulating the numbers of different cell types and in maintaining the equilibrium of cell populations. We have developed a novel spatial dynamic model of cells. We can characterize not only overall cell population dynamics, but also details of temporal-spatial relationship of individual cells within a tissue. In our model, the shape, growth, and division of each cell are modeled using a realistic geometric model. Furthermore, the inhibited growth rate, proliferation and differentiation probabilities of individual cells are modeled through feedback loops controlled by secreted factors of neighboring cells within a proper diffusion radius. With specific proliferation and differentiation probabilities, the actual division type that each cell will take is chosen by a Monte Carlo sampling process. With simulations we found that with proper strengths of inhibitions to growth and stem cell divisions, the whole tissue is capable of achieving a homeostatic size control. We discuss our findings on control mechanisms of the stability of the tissue development. Our model can be applied to study broad issues on tissue development and pattern formation in stem cell and cancer research.

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Mesh:

Year:  2012        PMID: 23367175      PMCID: PMC3790666          DOI: 10.1109/EMBC.2012.6347240

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  14 in total

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Review 3.  Asymmetry of stem cell fate and the potential impact of the niche: observations, simulations, and interpretations.

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Review 4.  Hippo signaling in organ size control.

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Journal:  Genes Dev       Date:  2007-04-15       Impact factor: 11.361

5.  Feedback regulation in multistage cell lineages.

Authors:  Wing-Cheong Lo; Ching-Shan Chou; Kimberly K Gokoffski; Frederic Y-M Wan; Arthur D Lander; Anne L Calof; Qing Nie
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6.  Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms.

Authors:  Scott Christley; Briana Lee; Xing Dai; Qing Nie
Journal:  BMC Syst Biol       Date:  2010-08-09

7.  Autoregulation of neurogenesis by GDF11.

Authors:  Hsiao-Huei Wu; Sanja Ivkovic; Richard C Murray; Sylvia Jaramillo; Karen M Lyons; Jane E Johnson; Anne L Calof
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8.  Mathematical modeling of cell population dynamics in the colonic crypt and in colorectal cancer.

Authors:  Matthew D Johnston; Carina M Edwards; Walter F Bodmer; Philip K Maini; S Jonathan Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-28       Impact factor: 11.205

9.  Cell lineages and the logic of proliferative control.

Authors:  Arthur D Lander; Kimberly K Gokoffski; Frederic Y M Wan; Qing Nie; Anne L Calof
Journal:  PLoS Biol       Date:  2009-01-20       Impact factor: 8.029

10.  Noise-driven stem cell and progenitor population dynamics.

Authors:  Martin Hoffmann; Hannah H Chang; Sui Huang; Donald E Ingber; Markus Loeffler; Joerg Galle
Journal:  PLoS One       Date:  2008-08-13       Impact factor: 3.240

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  8 in total

1.  Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis.

Authors:  Youfang Cao; Hammad Naveed; Claire Liang; Jie Liang
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

2.  Multiscale Modeling of Cellular Epigenetic States: Stochasticity in Molecular Networks, Chromatin Folding in Cell Nuclei, and Tissue Pattern Formation of Cells.

Authors:  Jie Liang; Youfang Cao; Gamze Gursoy; Hammad Naveed; Anna Terebus; Jieling Zhao
Journal:  Crit Rev Biomed Eng       Date:  2015

3.  Three-Dimensional Spatiotemporal Modeling of Colon Cancer Organoids Reveals that Multimodal Control of Stem Cell Self-Renewal is a Critical Determinant of Size and Shape in Early Stages of Tumor Growth.

Authors:  Huaming Yan; Anna Konstorum; John S Lowengrub
Journal:  Bull Math Biol       Date:  2017-07-05       Impact factor: 1.758

4.  Effects of mechanical properties on tumor invasion: insights from a cellular model.

Authors:  Hammad Naveed; Lisa X Xu
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

5.  Mechanical model of geometric cell and topological algorithm for cell dynamics from single-cell to formation of monolayered tissues with pattern.

Authors:  Sëma Kachalo; Hammad Naveed; Youfang Cao; Jieling Zhao; Jie Liang
Journal:  PLoS One       Date:  2015-05-14       Impact factor: 3.240

6.  Mechanisms of regulating tissue elongation in Drosophila wing: impact of oriented cell divisions, oriented mechanical forces, and reduced cell size.

Authors:  Yingzi Li; Hammad Naveed; Sema Kachalo; Lisa X Xu; Jie Liang
Journal:  PLoS One       Date:  2014-02-04       Impact factor: 3.240

7.  Heterogeneous structure of stem cells dynamics: statistical models and quantitative predictions.

Authors:  Paul Bogdan; Bridget M Deasy; Burhan Gharaibeh; Timo Roehrs; Radu Marculescu
Journal:  Sci Rep       Date:  2014-04-28       Impact factor: 4.379

8.  Feedback regulation in a stem cell model with acute myeloid leukaemia.

Authors:  Jianfeng Jiao; Min Luo; Ruiqi Wang
Journal:  BMC Syst Biol       Date:  2018-04-24
  8 in total

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