Literature DB >> 23367115

Recursive feature elimination for brain tumor classification using desorption electrospray ionization mass spectrometry imaging.

Behnood Gholami1, Isaiah Norton, Allen R Tannenbaum, Nathalie Y R Agar.   

Abstract

The metabolism and composition of lipids is of increasing interest for understanding and detecting disease processes. Lipid signatures of tumor type and grade have been demonstrated using magnetic resonance spectroscopy. Clinical management and ultimate prognosis of brain tumors depend largely on the tumor type, subtype, and grade. Mass spectrometry, a well-known analytical technique used to identify molecules in a given sample based on their mass, can significantly improve the problem of tumor type classification. This work focuses on the problem of identifying lipid features to use as input for classification. Feature selection could result in improvements in classifier performance, discovery of biomarkers, improved data interpretation, and patient treatment.

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Year:  2012        PMID: 23367115      PMCID: PMC3649005          DOI: 10.1109/EMBC.2012.6347180

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  18 in total

1.  Classifying human brain tumors by lipid imaging with mass spectrometry.

Authors:  Livia S Eberlin; Isaiah Norton; Allison L Dill; Alexandra J Golby; Keith L Ligon; Sandro Santagata; R Graham Cooks; Nathalie Y R Agar
Journal:  Cancer Res       Date:  2011-12-02       Impact factor: 12.701

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Authors:  Stuart A Grossman; Xiaobu Ye; Steven Piantadosi; Serena Desideri; Louis B Nabors; Myrna Rosenfeld; Joy Fisher
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3.  Development of stereotactic mass spectrometry for brain tumor surgery.

Authors:  Nathalie Y R Agar; Alexandra J Golby; Keith L Ligon; Isaiah Norton; Vandana Mohan; Justin M Wiseman; Allen Tannenbaum; Ferenc A Jolesz
Journal:  Neurosurgery       Date:  2011-02       Impact factor: 4.654

Review 4.  The emerging field of lipidomics.

Authors:  Markus R Wenk
Journal:  Nat Rev Drug Discov       Date:  2005-07       Impact factor: 84.694

5.  Imaging of meningioma progression by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.

Authors:  Nathalie Y R Agar; James G Malcolm; Vandana Mohan; Hong W Yang; Mark D Johnson; Allen Tannenbaum; Jeffrey N Agar; Peter M Black
Journal:  Anal Chem       Date:  2010-04-01       Impact factor: 6.986

6.  Discrimination of human astrocytoma subtypes by lipid analysis using desorption electrospray ionization imaging mass spectrometry.

Authors:  Livia S Eberlin; Allison L Dill; Alexandra J Golby; Keith L Ligon; Justin M Wiseman; R Graham Cooks; Nathalie Y R Agar
Journal:  Angew Chem Int Ed Engl       Date:  2010-08-09       Impact factor: 15.336

7.  Cancer statistics, 2008.

Authors:  Ahmedin Jemal; Rebecca Siegel; Elizabeth Ward; Yongping Hao; Jiaquan Xu; Taylor Murray; Michael J Thun
Journal:  CA Cancer J Clin       Date:  2008-02-20       Impact factor: 508.702

8.  Metabolism of diffuse intrinsic brainstem gliomas in children.

Authors:  Ashok Panigrahy; Marvin D Nelson; Jonathan L Finlay; Richard Sposto; Mark D Krieger; Floyd H Gilles; Stefan Blüml
Journal:  Neuro Oncol       Date:  2007-11-14       Impact factor: 12.300

9.  Effects of radiotherapy with concomitant and adjuvant temozolomide versus radiotherapy alone on survival in glioblastoma in a randomised phase III study: 5-year analysis of the EORTC-NCIC trial.

Authors:  Roger Stupp; Monika E Hegi; Warren P Mason; Martin J van den Bent; Martin J B Taphoorn; Robert C Janzer; Samuel K Ludwin; Anouk Allgeier; Barbara Fisher; Karl Belanger; Peter Hau; Alba A Brandes; Johanna Gijtenbeek; Christine Marosi; Charles J Vecht; Karima Mokhtari; Pieter Wesseling; Salvador Villa; Elizabeth Eisenhauer; Thierry Gorlia; Michael Weller; Denis Lacombe; J Gregory Cairncross; René-Olivier Mirimanoff
Journal:  Lancet Oncol       Date:  2009-03-09       Impact factor: 41.316

Review 10.  The 2007 WHO classification of tumours of the central nervous system.

Authors:  David N Louis; Hiroko Ohgaki; Otmar D Wiestler; Webster K Cavenee; Peter C Burger; Anne Jouvet; Bernd W Scheithauer; Paul Kleihues
Journal:  Acta Neuropathol       Date:  2007-07-06       Impact factor: 17.088

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  5 in total

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Journal:  Comput Struct Biotechnol J       Date:  2022-06-30       Impact factor: 6.155

2.  CAMUR: Knowledge extraction from RNA-seq cancer data through equivalent classification rules.

Authors:  Valerio Cestarelli; Giulia Fiscon; Giovanni Felici; Paola Bertolazzi; Emanuel Weitschek
Journal:  Bioinformatics       Date:  2015-10-30       Impact factor: 6.937

3.  Identification of an early diagnostic biomarker of lung adenocarcinoma based on co-expression similarity and construction of a diagnostic model.

Authors:  Zhirui Fan; Wenhua Xue; Lifeng Li; Chaoqi Zhang; Jingli Lu; Yunkai Zhai; Zhenhe Suo; Jie Zhao
Journal:  J Transl Med       Date:  2018-07-20       Impact factor: 5.531

4.  Prediction of repurposed drugs for Coronaviruses using artificial intelligence and machine learning.

Authors:  Akanksha Rajput; Anamika Thakur; Adhip Mukhopadhyay; Sakshi Kamboj; Amber Rastogi; Sakshi Gautam; Harvinder Jassal; Manoj Kumar
Journal:  Comput Struct Biotechnol J       Date:  2021-05-24       Impact factor: 7.271

5.  Multi-stage virtual screening of natural products against p38α mitogen-activated protein kinase: predictive modeling by machine learning, docking study and molecular dynamics simulation.

Authors:  Ruoqi Yang; Xuan Zha; Xingyi Gao; Kangmin Wang; Bin Cheng; Bin Yan
Journal:  Heliyon       Date:  2022-09-01
  5 in total

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