| Literature DB >> 23356551 |
Owen T Hill1, Thomas J Mason, Skai W Schwartz, Philip R Foulis.
Abstract
BACKGROUND: We sought to improve prostate cancer (PC) detection through developing a prostate biopsy clinical decision rule (PBCDR), based on an elevated PSA and laboratory biomarkers. This decision rule could be used after initial PC screening, providing the patient and clinician information to consider prior to biopsy.Entities:
Mesh:
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Year: 2013 PMID: 23356551 PMCID: PMC3567946 DOI: 10.1186/1471-2490-13-6
Source DB: PubMed Journal: BMC Urol ISSN: 1471-2490 Impact factor: 2.264
Demographics of study particpants by prostate biopsy results
| | |||||||
|---|---|---|---|---|---|---|---|
| Ethnicity* | | | | | | | |
| Caucasian | 237(69%) | 211(75%) | 99 (72%) | 238 (72%) | 149 (68%) | 31(65%) | 10 (63%) |
| Black | 18 (5%) | 19 (7%) | 13 (9%) | 34 (10%) | 22 (10%) | 7 (15%) | 4 (25%) |
| Hispanic | 22 (6%) | 14 (5%) | 7 (5%) | 15 (5%) | 11 (5%) | 1 (2%) | 1 (6%) |
| Other | 65 (20%) | 38 (14%) | 19 (14%) | 45 (13%) | 38 (17%) | 9 (18%) | 1 (6%) |
| Mean Age** | 68.17 | 67.83 | 67.75 | 68.37 | 69.73 | 67.73 | 67.88 |
| SD Age | 8.54 | 8.19 | 8.49 | 8.99 | 9.36 | 9.39 | 10.6 |
* P-value < 0.05.
** Not statistically significant.
Mean value and SD of Lab biomarkers by Prostate biopsy results
| | |||||||
|---|---|---|---|---|---|---|---|
| | | | | | | | |
| Mean | 4 | 3.98 | 4.09 | 4.04 | 4 | 3.95 | 3.9 |
| 0.38 | 0.37 | 0.37 | 0.38 | 0.42 | 0.39 | 0.42 | |
| Mean | 14.27 | 14.24 | 14.3 | 14.17 | 13.7 | 12.59 | 12.84 |
| SD | 1.54 | 1.76 | 1.68 | 1.66 | 1.87 | 2.2 | 14.08 |
| Mean | 4.67 | 4.65 | 4.76 | 4.69 | 4.63 | 4.58 | 4.5 |
| SD | 0.46 | 0.52 | 0.52 | 0.5 | 0.57 | 0.44 | 0.67 |
| Mean | 1.25 | 1.16 | 1.2 | 1.16 | 1.15 | 1.14 | 1.13 |
| SD | 0.7 | 0.32 | 0.35 | 0.56 | 0.34 | 0.39 | 0.2 |
| Mean | 8.06 | 7.99 | 7.67 | 9.7 | 14.12 | 21.85 | 44.03 |
| SD | 6.74 | 11.2 | 4.58 | 11.66 | 29.27 | 30.21 | 48.71 |
| Mean | 90.78 | 91.13 | 90.09 | 91.17 | 90.98 | 90.23 | 92.24 |
| SD | 4.65 | 5.35 | 5.79 | 5.05 | 6.11 | 4.18 | 4.99 |
| Mean | 0.66 | 0.65 | 0.6 | 0.66 | 0.67 | 0.65 | 0.6 |
| SD | 0.4 | 0.3 | 0.25 | 0.35 | 0.35 | 0.34 | 0.3 |
| Mean | 17.98 | 17.6 | 17.23 | 16.53 | 17.4 | 16 | 15.97 |
| SD | 6.93 | 7.9 | 6.5 | 6.56 | 6.73 | 6.74 | 4.54 |
| Mean | 230.45 | 227.63 | 240.81 | 226.54 | 232.5 | 234.3 | 235.44 |
| SD | 59.16 | 61.56 | 84.31 | 62.26 | 69.25 | 68.07 | 50.76 |
| Mean | 7.24 | 7.11 | 7.42 | 7.19 | 7.13 | 10.41 | 7.37 |
| SD | 2.11 | 2.17 | 3.24 | 2.42 | 2.08 | 17.78 | 1.84 |
| Mean | 12.93 | 12.56 | 12.31 | 13.37 | 11.92 | 10.71 | 10.03 |
| SD | 5.44 | 5.78 | 5.29 | 5.25 | 5.43 | 5.44 | 4.99 |
| Mean | 426.91 | 424.78 | 371.84 | 404.6 | 406.41 | 392.11 | 393.33 |
| SD | 375.09 | 144.84 | 185.54 | 155.38 | 158.19 | 170.98 | 73.76 |
*Trend significance (P<0.05).
Odds ratio and 95% CI for method 1: PC (all stages) vs. non-cancerous conditions, per laboratory unit
| HGB * | 0.872 | (.821-.927) |
| Age | 1.01 | (.99-1.02) |
| PSA* | 1.04 | (1.02-1.06) |
| Hematuria | 0.953 | (0.86-1.06) |
| Proteinuria | 0.943 | (0.83-1.07) |
| Albumin | 1.03 | (0.78-1.36) |
| Creatinine | 0.762 | (0.76-1.01) |
| MCV | 1.01 | (0.99-1.03) |
| PLT | 1 | (0.99-1.00) |
| RBC | 0.918 | (0.75-1.13) |
| Total Bilirubin | 1.14 | (0.84-1.55) |
| BUN* | 0.98 | (0.96-0.99) |
| WBC | 1.01 | (0.98-1.05) |
*P < 0.05.
Odds ratio and 95% CI for method2: PC (stage II, III, IV) vs. other (PC stage I, PIN, BPH, prostatitis), per laboratory unit
| HGB * | 0.79 | (.738-.851) |
| AGE* | 1.02 | (1.01-1.03) |
| PSA* | 1.04 | (1.03-1.05) |
| Hematuria* | 1.23 | (1.10-1.38) |
| Proteinuria | 1.16 | (1.00-1.34) |
| Albumin | 0.77 | (0.55-1.08) |
| Creatinine | 0.76 | (0.52-1.12) |
| MCV | 1 | (0.97-1.03) |
| PLT | 1 | (0.99-1.00) |
| RBC* | 0.76 | (0.59-0.98) |
| Total Bilirubin | 1.15 | (0.80-1.66) |
| BUN | 0.99 | (0.98-1.01) |
| WBC | 1.03 | (0.99-1.06) |
*P < 0.05.
Summary table of independent variables that demonstrate statistically significant relations with PC (by analysis methods 1–2)
| Hemoglobin (HGB) | ** | ** |
| RBC count | | * |
| BUN | * | |
| Hematuria | | * |
| PSA | ** | ** |
| Age | * |
*P <0.05, ** P <0.001.
Positive predictive value of PSA > 4 ng/dL
| PC Cases/Total biopsies | 616/1,378 | 284/1,378 |
| Positive Predictive Value | 44.70% | 20.60% |
Method 1: PC (all stages) vs. non-cancerous conditions (PIN, BPH, prostatitis).
Method 2: PC (stage II, III, IV) vs. other (stage I PC, PIN, BPH, prostatitis).
Best fit logistical regression for method 1: risk of PC with lab biomarkers and 95% CI, per laboratory unit method 1: PC (all stages) vs. non-cancerous conditions (PIN, BPH, prostatitis)
| Intercept | −7.9494 | 1.88 | xx | xx | 0.68 | 1777.339 |
| HGB* | −0.3519 | 0.06 | 0.70 | (0.63-.79) | | |
| RBC* | −0.9227 | 0.21 | 0.40 | (0.26-0.60) | | |
| Hematuria* | −0.2874 | 0.15 | 0.75 | (0.56-1.01) | | |
| Creatinine* | −0.4393 | 0.17 | 0.65 | (0.47-0.89) | | |
| Black* | 0.6336 | 0.21 | 1.89 | (1.25-2.90) | | |
| PSA* | 0.0408 | 0.08 | 1.04 | (1.03-1.06) | | |
| AGE* | 0.0196 | 0.01 | 1.02 | (1.01-1.03) | | |
| MCV* | 0.0663 | 0.02 | 1.07 | (1.04-1.10) | | |
| Albumin | 0.2871 | 0.16 | 1.33 | (0.98-1.82) |
*P < 0.05.
Best fit logistical regression model for method 2: risk and 95% CI for PC with lab biomarkers, per laboratory unit
| Intercept | −5.1041 | xx | xx | xx | 0.713 | 1276.366 |
| HGB* | −0.3784 | 0.05 | 0.69 | (0.62, 0.76) | | |
| RBC* | −0.7641 | 0.21 | 0.46 | (0.30, 0.70) | | |
| Creatinine* | −0.6069 | 0.23 | 0.55 | (0.35, 0.85) | | |
| PSA * | 0.0325 | 0.01 | 1.03 | (1.02, 1.05) | | |
| Age* | 0.0183 | 0.01 | 1.02 | (1.01, 1.04) | | |
| MCV* | 0.0488 | 0.02 | 1.05 | (1.02, 1.08) | | |
| Black | 0.3612 | 0.24 | 1.44 | (0.90, 2.31) |
*P <0.001.
Figure 1Diagnostic statistics = ROC curve of PSA Alone - Method 1.
Figure 2Diagnostic statistics = ROC curve of PSA + lab biomarkers - Method 1.
Figure 3Diagnostic statistics = ROC curve of PSA Alone - Method 2.
Figure 4Diagnostic statistics = ROC curve of PSA + lab biomarkers - Method 2.
Sensitivity, specificity, PPV, and NPV for probability cut-off points
| | ||
|---|---|---|
| Cut-point 1 (MLE) | Probability .45 | Probability .41 |
| Sensitivity | 52.1 % | 18.3 % |
| Specificity | 74.0 % | 96.2 % |
| PPV | 61.8 % | 55.3 % |
| NPV | 65.7% | 81.9 % |
| Cut-point 2 (Sen. 90%) | Probability .33 | Probability .13 |
| Sensitivity | 90.9 % | 89.8 % |
| Specificity | 17.6 % | 28.0 % |
| PPV | 47.1 % | 20.6 % |
| NPV | 70.5 % | 91.3 % |
| Cut-point 3 (Sen. 80%) | Probability .37 | Probability .15 |
| Sensitivity | 80.5 % | 78.2 % |
| Specificity | 37.1 % | 45.0 % |
| PPV | 50.9 % | 28.7 % |
| NPV | 70.2 % | 88.8 % |
| Cut-point 4 (Spc. 80%) | Probability .48 | Probability .23 |
| Sensitivity | 39.9 % | 45.8 % |
| Specificity | 81.4 % | 79.5 % |
| PPV | 63.4 % | 36.7 % |
| NPV | 62.6 % | 85.0 % |
Comparison of PPV between PSA (> 4ng/dL) and cut-points 1–4 by analysis method
| Crude PPV | 44.7 % | 20.6 % |
| Cut-point 1 | 61.8 % | 55.3 % |
| Cut-point 2 | 47.1 % | 20.6% |
| Cut-point 3 | 50.9 % | 28.7% |
| Cut-point 4 | 63.4 % | 36.7% |
Mean value, SD, and 95% CI of lab biomarkers by PC stage
| | ||||
|---|---|---|---|---|
| Mean | 4.04 | 4.00 | 3.95 | 3.90 |
| SD | 0.38 | 0.42 | 0.39 | 0.42 |
| 95%CI | (4.00, 4.08) | (3.96, 4.05) | (3.84, 4.06) | (3.69, 4.11) |
| Mean | 14.17 | 13.70 | 12.59 | 12.84 |
| SD | 1.66 | 1.87 | 2.20 | 14.08 |
| 95%CI | (14.00, 14.35) | (13.45, 13.95) | (11.97, 13.21) | (5.94, 19.74) |
| Mean | 4.69 | 4.63 | 4.58 | 4.50 |
| SD | 0.50 | 0.57 | 0.44 | 0.67 |
| 95%CI | (4.64, 4.74) | (4.55, 4.71) | (4.46, 4.70) | (4.17, 4.83) |
| Mean | 1.16 | 1.15 | 1.14 | 1.13 |
| SD | 0.56 | 0.34 | 0.39 | 0.20 |
| 95%CI | (1.10, 1.22) | (1.11, 1.20) | (1.03, 1.25) | (1.03, 1.23) |
| Mean | 9.70 | 14.12 | 21.85 | 44.03 |
| SD | 11.66 | 29.27 | 30.21 | 48.71 |
| 95%CI | (8.45, 10.95) | (10.25, 17.99) | (13.31, 30.39) | (20.16, 67.90) |
| Mean | 91.17 | 90.98 | 90.23 | 92.24 |
| SD | 5.05 | 6.11 | 4.18 | 4.99 |
| 95%CI | (90.63, 91.71) | (90.17, 91.79) | (89.05, 91.41) | (89.79, 94.69) |
| Mean | 0.66 | 0.67 | 0.65 | 0.60 |
| SD | 0.35 | 0.35 | 0.34 | 0.30 |
| 95%CI | (0.28, 1.04) | (0.62, 0.72) | (0.60, 0.70) | (0.45, 0.75) |
| Mean | 16.53 | 17.40 | 16.00 | 15.97 |
| SD | 6.56 | 6.73 | 6.74 | 4.54 |
| 95%CI | (15.82, 17.24) | (16.51, 18.29) | (17.91, 14.09) | (13.74, 18.20) |
| Mean | 226.54 | 232.50 | 234.30 | 235.44 |
| SD | 62.26 | 69.25 | 68.07 | 50.76 |
| 95%CI | (219.8, 233.2) | (223.4, 241.7) | (215.1, 253.6) | (210.6, 260.3) |
| Mean | 7.19 | 7.13 | 10.41 | 7.37 |
| SD | 2.42 | 2.08 | 1.78 | 1.84 |
| 95%CI | (6.93, 7.45) | (6.86, 7.40) | (9.91, 10.91) | (6.47, 8.27) |
* P <0.05.
Case example utilizing method 2, cut-point 1
| HGB | 15.2 | -0.378 | -5.74 | -5.10 |
| RBC | 4.50 | -0.764 | -3.44 | |
| Black | (Yes=1) 0 | 0.361 | 0.00 | |
| Age | 60 | 0.018 | 1.08 | |
| PSA | 4.3 | 0.033 | 0.129 | |
| Creatinine | 1.65 | -0.601 | -0.99 | |
| MCV | 90.00 | 0.050 | 4.5 | |
| | | sum of B*value | 2.42 | |
| Plus intercept=Sum | -2.68 |
The probability of this cut-point is .41, therefore the Log OR p/1 – p = .41/1-.41, thus the cut-point is −0.16. (If the number yielded from the equation is above this value, the patient should be referred for prostate biopsy). The patient is a 60 year old, Caucasian male with a recent PSA test value of 4.3 ng/dL. In addition, he had additional lab work to include a HGB, RBC count, MCV, Creatinine, and a negative test for Hematuria. Utilizing method 2, cut-point 1, the Patient’s PBCDR total sum is -2.68, which is less than -0.16. Therefore, the recommendation is no biopsy for the patient.