Literature DB >> 23355118

Dynamic spatial pattern formation in the sea urchin embryo.

Syed Shahed Riaz1, Michael C Mackey.   

Abstract

The spatiotemporal evolution of various proteins during the endo-mesodermal specification of the sea urchin embryo in the form of an expanding torus has been known experimentally for some time, and the regulatory network that controls this dynamic evolution of gene expression has been recently partially clarified. In this paper we construct a relatively simple mathematical model of this process that retains the basic features of the gene network and is able to reproduce the spatiotemporal patterns observed experimentally. We show here that a mathematical model based only on the gene-protein interactions so far reported in the literature predicts the origin of the behaviour to lie on a delayed negative feed-back loop due to the protein Blimp1 on the transcription of its corresponding mRNA. However though consistent with earlier results, this contradicts recent findings, where it has been established that the dynamical evolution of Wnt8 protein is independent of Blimp1. This leads us to offer a modified version of the original model based on observations in similar systems, and some more recent work in the sea urchin, assuming the existence of a mechanism involving inhibitory loop on wnt8 transcription. This hypothesis leads to a better match with the experimental results and suggests that the possibility of the existence of such an interaction in the sea urchin should be explored.

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Year:  2013        PMID: 23355118     DOI: 10.1007/s00285-012-0640-8

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  17 in total

1.  Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays.

Authors:  Nicholas A M Monk
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

2.  A gene regulatory network subcircuit drives a dynamic pattern of gene expression.

Authors:  Joel Smith; Christina Theodoris; Eric H Davidson
Journal:  Science       Date:  2007-11-02       Impact factor: 47.728

3.  Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo.

Authors:  Joel Smith; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

4.  A gene regulatory network controlling the embryonic specification of endoderm.

Authors:  Isabelle S Peter; Eric H Davidson
Journal:  Nature       Date:  2011-05-29       Impact factor: 49.962

5.  High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development.

Authors:  Stefan C Materna; Jongmin Nam; Eric H Davidson
Journal:  Gene Expr Patterns       Date:  2010-04-14       Impact factor: 1.224

6.  cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network.

Authors:  Takuya Minokawa; Athula H Wikramanayake; Eric H Davidson
Journal:  Dev Biol       Date:  2005-11-10       Impact factor: 3.582

7.  Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations.

Authors:  Samuel Bernard; Branka Cajavec; Laurent Pujo-Menjouet; Michael C Mackey; Hanspeter Herzel
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2006-05-15       Impact factor: 4.226

8.  Instability of Hes7 protein is crucial for the somite segmentation clock.

Authors:  Hiromi Hirata; Yasumasa Bessho; Hiroshi Kokubu; Yoshito Masamizu; Shuichi Yamada; Julian Lewis; Ryoichiro Kageyama
Journal:  Nat Genet       Date:  2004-05-30       Impact factor: 38.330

Review 9.  Dynamic hematological disease: a review.

Authors:  Catherine Foley; Michael C Mackey
Journal:  J Math Biol       Date:  2008-03-04       Impact factor: 2.259

10.  A proposed mechanism for the interaction of the segmentation clock and the determination front in somitogenesis.

Authors:  Moisés Santillán; Michael C Mackey
Journal:  PLoS One       Date:  2008-02-06       Impact factor: 3.240

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