Literature DB >> 23354747

A novel 3-sulfinopropionyl coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis strain DPN7T acting as a key enzyme during catabolism of 3,3'-dithiodipropionic acid is a member of the acyl-CoA dehydrogenase superfamily.

Marc Schürmann1, Anika Deters, Jan Hendrik Wübbeler, Alexander Steinbüchel.   

Abstract

3-Sulfinopropionyl coenzyme A (3SP-CoA) desulfinase (AcdDPN7) is a new desulfinase that catalyzes the sulfur abstraction from 3SP-CoA in the betaproteobacterium Advenella mimigardefordensis strain DPN7(T). During investigation of a Tn5::mob-induced mutant defective in growth on 3,3'-dithiodipropionate (DTDP) and also 3-sulfinopropionate (3SP), the transposon insertion was mapped to an open reading frame with the highest homology to an acyl-CoA dehydrogenase (Acd) from Burkholderia phenoliruptrix strain BR3459a (83% identical and 91% similar amino acids). An A. mimigardefordensis Δacd mutant was generated and verified the observed phenotype of the Tn5::mob-induced mutant. For enzymatic studies, AcdDPN7 was heterologously expressed in Escherichia coli BL21(DE3)/pLysS by using pET23a::acdDPN7. The purified protein is yellow and contains a noncovalently bound flavin adenine dinucleotide (FAD) cofactor, as verified by high-performance liquid chromatography-electrospray ionization mass spectrometry (HPLC-ESI-MS) analyses. Size-exclusion chromatography revealed a native molecular mass of about 173 kDa, indicating a homotetrameric structure (theoretically 179 kDa), which is in accordance with other members of the acyl-CoA dehydrogenase superfamily. In vitro assays unequivocally demonstrated that the purified enzyme converted 3SP-CoA into propionyl-CoA and sulfite (SO3(2-)). Kinetic studies of AcdDPN7 revealed a Vmax of 4.19 μmol min(-1) mg(-1), an apparent Km of 0.013 mM, and a kcat/Km of 240.8 s(-1) mM(-1) for 3SP-CoA. However, AcdDPN7 is unable to perform a dehydrogenation, which is the usual reaction catalyzed by members of the acyl-CoA dehydrogenase superfamily. Comparison to other known desulfinases showed a comparably high catalytic efficiency of AcdDPN7 and indicated a novel reaction mechanism. Hence, AcdDPN7 encodes a new desulfinase based on an acyl-CoA dehydrogenase (EC 1.3.8.x) scaffold. Concomitantly, we identified the gene product that is responsible for the final desulfination step during catabolism of 3,3'-dithiodipropionate (DTDP), a sulfur-containing precursor substrate for biosynthesis of polythioesters.

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Year:  2013        PMID: 23354747      PMCID: PMC3624521          DOI: 10.1128/JB.02105-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  60 in total

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5.  Proton abstraction reaction, steady-state kinetics, and oxidation-reduction potential of human glutaryl-CoA dehydrogenase.

Authors:  T M Dwyer; K S Rao; S I Goodman; F E Frerman
Journal:  Biochemistry       Date:  2000-09-19       Impact factor: 3.162

6.  Crystal structure of cystalysin from Treponema denticola: a pyridoxal 5'-phosphate-dependent protein acting as a haemolytic enzyme.

Authors:  H I Krupka; R Huber; S C Holt; T Clausen
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

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Authors:  J B Westover; S I Goodman; F E Frerman
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Journal:  Biochim Biophys Acta       Date:  2002-07-29

9.  Spectroscopic and kinetic analyses reveal the pyridoxal 5'-phosphate binding mode and the catalytic features of Treponema denticola cystalysin.

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10.  Naturally occurring genetic transfer of hydrogen-oxidizing ability between strains of Alcaligenes eutrophus.

Authors:  B Friedrich; C Hogrefe; H G Schlegel
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  8 in total

1.  Identification of 3-sulfinopropionyl coenzyme A (CoA) desulfinases within the Acyl-CoA dehydrogenase superfamily.

Authors:  Marc Schürmann; Rebecca Michaela Demming; Marco Krewing; Judith Rose; Jan Hendrik Wübbeler; Alexander Steinbüchel
Journal:  J Bacteriol       Date:  2013-12-06       Impact factor: 3.490

2.  Succinyl-CoA:3-sulfinopropionate CoA-transferase from Variovorax paradoxus strain TBEA6, a novel member of the class III coenzyme A (CoA)-transferase family.

Authors:  Marc Schürmann; Beatrice Hirsch; Jan Hendrik Wübbeler; Nadine Stöveken; Alexander Steinbüchel
Journal:  J Bacteriol       Date:  2013-06-14       Impact factor: 3.490

3.  Paracoccus denitrificans PD1222 utilizes hypotaurine via transamination followed by spontaneous desulfination to yield acetaldehyde and, finally, acetate for growth.

Authors:  Ann-Katrin Felux; Karin Denger; Michael Weiss; Alasdair M Cook; David Schleheck
Journal:  J Bacteriol       Date:  2013-04-19       Impact factor: 3.490

4.  Novel characteristics of succinate coenzyme A (Succinate-CoA) ligases: conversion of malate to malyl-CoA and CoA-thioester formation of succinate analogues in vitro.

Authors:  Johannes Christoph Nolte; Marc Schürmann; Catherine-Louise Schepers; Elvira Vogel; Jan Hendrik Wübbeler; Alexander Steinbüchel
Journal:  Appl Environ Microbiol       Date:  2013-10-18       Impact factor: 4.792

5.  Mercaptosuccinate dioxygenase, a cysteine dioxygenase homologue, from Variovorax paradoxus strain B4 is the key enzyme of mercaptosuccinate degradation.

Authors:  Ulrike Brandt; Marc Schürmann; Alexander Steinbüchel
Journal:  J Biol Chem       Date:  2014-09-16       Impact factor: 5.157

6.  3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7(T): crystal structure and function of a desulfinase with an acyl-CoA dehydrogenase fold.

Authors:  Marc Schürmann; Rob Meijers; Thomas R Schneider; Alexander Steinbüchel; Michele Cianci
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-05-23

7.  Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.

Authors:  Christina Meinert; Ulrike Brandt; Viktoria Heine; Jessica Beyert; Sina Schmidl; Jan Hendrik Wübbeler; Birgit Voigt; Katharina Riedel; Alexander Steinbüchel
Journal:  PLoS One       Date:  2017-03-30       Impact factor: 3.240

8.  The catabolism of 3,3'-thiodipropionic acid in Variovorax paradoxus strain TBEA6: A proteomic analysis.

Authors:  Viktoria Heine; Christina Meinert-Berning; Janina Lück; Nadine Mikowsky; Birgit Voigt; Katharina Riedel; Alexander Steinbüchel
Journal:  PLoS One       Date:  2019-02-11       Impact factor: 3.240

  8 in total

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