Literature DB >> 23352665

Rapid transcription fosters coordinate snail expression in the Drosophila embryo.

Alistair Nicol Boettiger1, Michael Levine.   

Abstract

Transcription is commonly held to be a highly stochastic process, resulting in considerable heterogeneity of gene expression among the different cells in a population. Here, we employ quantitative in situ hybridization methods coupled with high-resolution imaging assays to measure the expression of snail, a developmental patterning gene necessary for coordinating the invagination of the mesoderm during gastrulation of the Drosophila embryo. Our measurements of steady-state mRNAs suggest that there is very little variation in snail expression across the different cells that make up the mesoderm and that synthesis approaches the kinetic limits of Pol II processivity. We propose that rapid transcription kinetics and negative autoregulation are responsible for the remarkable homogeneity of snail expression and the coordination of mesoderm invagination.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23352665      PMCID: PMC4257496          DOI: 10.1016/j.celrep.2012.12.015

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  24 in total

Review 1.  Noise in gene expression: origins, consequences, and control.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2005-09-23       Impact factor: 47.728

2.  Real-time kinetics of gene activity in individual bacteria.

Authors:  Ido Golding; Johan Paulsson; Scott M Zawilski; Edward C Cox
Journal:  Cell       Date:  2005-12-16       Impact factor: 41.582

3.  Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

Authors:  Julia Zeitlinger; Robert P Zinzen; Alexander Stark; Manolis Kellis; Hailan Zhang; Richard A Young; Michael Levine
Journal:  Genes Dev       Date:  2007-02-15       Impact factor: 11.361

4.  In vivo dynamics of RNA polymerase II transcription.

Authors:  Xavier Darzacq; Yaron Shav-Tal; Valeria de Turris; Yehuda Brody; Shailesh M Shenoy; Robert D Phair; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2007-08-05       Impact factor: 15.369

5.  Establishment of the mesoderm-neuroectoderm boundary in the Drosophila embryo.

Authors:  D Kosman; Y T Ip; M Levine; K Arora
Journal:  Science       Date:  1991-10-04       Impact factor: 47.728

6.  twist and snail as positive and negative regulators during Drosophila mesoderm development.

Authors:  M Leptin
Journal:  Genes Dev       Date:  1991-09       Impact factor: 11.361

7.  Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination.

Authors:  Stefan Klumpp; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-18       Impact factor: 11.205

8.  RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.

Authors:  Julia Zeitlinger; Alexander Stark; Manolis Kellis; Joung-Woo Hong; Sergei Nechaev; Karen Adelman; Michael Levine; Richard A Young
Journal:  Nat Genet       Date:  2007-11-11       Impact factor: 38.330

9.  Single-RNA counting reveals alternative modes of gene expression in yeast.

Authors:  Daniel Zenklusen; Daniel R Larson; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2008-11-16       Impact factor: 15.369

10.  Imaging individual mRNA molecules using multiple singly labeled probes.

Authors:  Arjun Raj; Patrick van den Bogaard; Scott A Rifkin; Alexander van Oudenaarden; Sanjay Tyagi
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

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  28 in total

Review 1.  Analytic approaches to stochastic gene expression in multicellular systems.

Authors:  Alistair Nicol Boettiger
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

2.  Hormone-induced and DNA demethylation-induced relief of a tissue-specific and developmentally regulated block in transcriptional elongation.

Authors:  Manjeet K Rao; Yuiko Matsumoto; Marcy E Richardson; Subbarayalu Panneerdoss; Anjana Bhardwaj; Jacqueline M Ward; Sreenath Shanker; Anilkumar Bettegowda; Miles F Wilkinson
Journal:  J Biol Chem       Date:  2014-10-20       Impact factor: 5.157

3.  Tracing DNA paths and RNA profiles in cultured cells and tissues with ORCA.

Authors:  Leslie J Mateo; Nasa Sinnott-Armstrong; Alistair N Boettiger
Journal:  Nat Protoc       Date:  2021-02-22       Impact factor: 13.491

4.  Spatiotemporal control of gene expression boundaries using a feedforward loop.

Authors:  Prasad U Bandodkar; Hadel Al Asafen; Gregory T Reeves
Journal:  Dev Dyn       Date:  2020-01-23       Impact factor: 3.780

5.  Ordered patterning of the sensory system is susceptible to stochastic features of gene expression.

Authors:  Ritika Giri; Dimitrios K Papadopoulos; Diana M Posadas; Hemanth K Potluri; Pavel Tomancak; Madhav Mani; Richard W Carthew
Journal:  Elife       Date:  2020-02-26       Impact factor: 8.140

Review 6.  Genetic determinants and cellular constraints in noisy gene expression.

Authors:  Alvaro Sanchez; Ido Golding
Journal:  Science       Date:  2013-12-06       Impact factor: 47.728

7.  Quantitative Single-Embryo Profile of Drosophila Genome Activation and the Dorsal-Ventral Patterning Network.

Authors:  Jeremy E Sandler; Angelike Stathopoulos
Journal:  Genetics       Date:  2016-02-19       Impact factor: 4.562

8.  Comparing mRNA levels using in situ hybridization of a target gene and co-stain.

Authors:  Zeba Wunderlich; Meghan D Bragdon; Angela H DePace
Journal:  Methods       Date:  2014-01-13       Impact factor: 3.608

9.  Transcriptional Memory in the Drosophila Embryo.

Authors:  Teresa Ferraro; Emilia Esposito; Laure Mancini; Sam Ng; Tanguy Lucas; Mathieu Coppey; Nathalie Dostatni; Aleksandra M Walczak; Michael Levine; Mounia Lagha
Journal:  Curr Biol       Date:  2015-12-31       Impact factor: 10.834

10.  Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo.

Authors:  Mounia Lagha; Jacques P Bothma; Emilia Esposito; Samuel Ng; Laura Stefanik; Chiahao Tsui; Jeffrey Johnston; Kai Chen; David S Gilmour; Julia Zeitlinger; Michael S Levine
Journal:  Cell       Date:  2013-05-23       Impact factor: 41.582

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