Literature DB >> 23348671

Quantitative assessment of the relative contributions of steric repulsion and chemical interactions to macromolecular crowding.

Allen P Minton1.   

Abstract

The term "macromolecular crowding" denotes the combined effects of high volume fractions of nominally unrelated macromolecules upon the equilibrium and transport properties of all macrosolutes, dilute as well as concentrated, in the crowded medium. We present a formal partitioning of the total crowding effect into contributions from steric exclusion (excluded volume) and weak, nonspecific attractive interactions between a concentrated "crowding agent" and reactant and product species present at trace concentration. A numerical example of the combined effect of both steric and chemical interactions between crowder and tracer upon the reversible dimerization of tracer is presented, based upon reasonable estimates of the magnitude of both repulsive and attractive interactions between tracer and crowder species.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2013        PMID: 23348671      PMCID: PMC3557810          DOI: 10.1002/bip.22163

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  17 in total

1.  Direct observation of the self-association of dilute proteins in the presence of inert macromolecules at high concentration via tracer sedimentation equilibrium: theory, experiment, and biological significance.

Authors:  G Rivas; J A Fernandez; A P Minton
Journal:  Biochemistry       Date:  1999-07-20       Impact factor: 3.162

2.  The effective hard particle model provides a simple, robust, and broadly applicable description of nonideal behavior in concentrated solutions of bovine serum albumin and other nonassociating proteins.

Authors:  Allen P Minton
Journal:  J Pharm Sci       Date:  2007-12       Impact factor: 3.534

3.  Effective hard particle model for the osmotic pressure of highly concentrated binary protein solutions.

Authors:  Allen P Minton
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

4.  Static light scattering from concentrated protein solutions II: experimental test of theory for protein mixtures and weakly self-associating proteins.

Authors:  Cristina Fernández; Allen P Minton
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

5.  Common crowding agents have only a small effect on protein-protein interactions.

Authors:  Yael Phillip; Eilon Sherman; Gilad Haran; Gideon Schreiber
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

Review 6.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

Authors:  Huan-Xiang Zhou; Germán Rivas; Allen P Minton
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

Review 7.  Macromolecular crowding: biochemical, biophysical, and physiological consequences.

Authors:  S B Zimmerman; A P Minton
Journal:  Annu Rev Biophys Biomol Struct       Date:  1993

8.  Attractive protein-polymer interactions markedly alter the effect of macromolecular crowding on protein association equilibria.

Authors:  Ming Jiao; Hong-Tao Li; Jie Chen; Allen P Minton; Yi Liang
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

9.  A molecular model for the dependence of the osmotic pressure of bovine serum albumin upon concentration and pH.

Authors:  A P Minton
Journal:  Biophys Chem       Date:  1995-12       Impact factor: 2.352

10.  The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences.

Authors:  A P Minton
Journal:  Mol Cell Biochem       Date:  1983       Impact factor: 3.396

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  40 in total

1.  Identification of primary and secondary UBA footprints on the surface of ubiquitin in cell-mimicking crowded solution.

Authors:  Francesca Munari; Andrea Bortot; Serena Zanzoni; Mariapina D'Onofrio; David Fushman; Michael Assfalg
Journal:  FEBS Lett       Date:  2017-03-19       Impact factor: 4.124

2.  Impact of reconstituted cytosol on protein stability.

Authors:  Mohona Sarkar; Austin E Smith; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

3.  Effects of hydrophobic macromolecular crowders on amyloid β (16-22) aggregation.

Authors:  David C Latshaw; Carol K Hall
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

Review 4.  Advanced protein formulations.

Authors:  Wei Wang
Journal:  Protein Sci       Date:  2015-05-01       Impact factor: 6.725

5.  Hydrogen exchange of disordered proteins in Escherichia coli.

Authors:  Austin E Smith; Larry Z Zhou; Gary J Pielak
Journal:  Protein Sci       Date:  2015-03-02       Impact factor: 6.725

6.  A sensor for quantification of macromolecular crowding in living cells.

Authors:  Arnold J Boersma; Inge S Zuhorn; Bert Poolman
Journal:  Nat Methods       Date:  2015-02-02       Impact factor: 28.547

7.  Molecular crowding enhances facilitated diffusion of two human DNA glycosylases.

Authors:  Shannen L Cravens; Joseph D Schonhoft; Meng M Rowland; Alyssa A Rodriguez; Breeana G Anderson; James T Stivers
Journal:  Nucleic Acids Res       Date:  2015-04-06       Impact factor: 16.971

Review 8.  Soft interactions and crowding.

Authors:  Mohona Sarkar; Conggang Li; Gary J Pielak
Journal:  Biophys Rev       Date:  2013-02-21

Review 9.  Macromolecular interactions of the bacterial division FtsZ protein: from quantitative biochemistry and crowding to reconstructing minimal divisomes in the test tube.

Authors:  Germán Rivas; Carlos Alfonso; Mercedes Jiménez; Begoña Monterroso; Silvia Zorrilla
Journal:  Biophys Rev       Date:  2013-04-16

Review 10.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

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