Literature DB >> 23345900

Model of DNA dynamics and replication.

Leif Matsson1.   

Abstract

Before DNA replication can be initiated a definite number of adenosine triphosphate (ATP) containing pre-replication protein complexes (pre-RCs) must be assembled and bound to DNA like in a super-critical mass. A chemically driven dynamics of the Ginzburg-Landau (GL) type is derived, using the non-equilibrium equation for binding of pre-RCs to DNA and a probabilistic conformational distribution of these protein complexes. This dynamics, in which the DNA-protein system behaves like a nonlinear elastically braced string (NEBS), can control the cell cycle via conformational transitions such that G(2) cells contain exactly twice as much DNA as G(1) cells. After adjustment of previously-made derivations, the model is compared with cell growth data from the T lymphocyte MLA-144.

Entities:  

Keywords:  DNA compaction; DNA condensation; DNA conformation; DNA dynamics; DNA folding; DNA packing; DNA replication; Ginzburg-Landau model; cell cycle regulation; commitment; elastically braced string; initiation; initiator protein assembly; non-equilibrium dynamics; origin recognition; pre-replication complex; reaction coordinate; termination

Year:  2005        PMID: 23345900      PMCID: PMC3456345          DOI: 10.1007/s10867-005-4635-1

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  19 in total

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Authors:  N Dyson
Journal:  Genes Dev       Date:  1998-08-01       Impact factor: 11.361

3.  Soliton growth-signal transduction in topologically quantized T cells.

Authors: 
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4.  Response theory for non-stationary ligand-receptor interaction and a solution to the growth signal firing problem.

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Journal:  J Theor Biol       Date:  1996-05-21       Impact factor: 2.691

Review 5.  Initiation of DNA replication in eukaryotic cells.

Authors:  A Dutta; S P Bell
Journal:  Annu Rev Cell Dev Biol       Date:  1997       Impact factor: 13.827

6.  Lyotropic ion channel current model compared with ising model.

Authors:  Leif Matsson; Virulh Sa-Yakanit; Santipong Boribarn
Journal:  J Biol Phys       Date:  2005-12       Impact factor: 1.365

Review 7.  The Pezcoller lecture: cancer cell cycles revisited.

Authors:  C J Sherr
Journal:  Cancer Res       Date:  2000-07-15       Impact factor: 12.701

8.  Determining to divide: how do cells decide?

Authors:  Kendall A Smith
Journal:  J Biol Phys       Date:  2005-12       Impact factor: 1.365

9.  The bacterial condensin MukBEF compacts DNA into a repetitive, stable structure.

Authors:  Ryan B Case; Yun-Pei Chang; Steven B Smith; Jeff Gore; Nicholas R Cozzarelli; Carlos Bustamante
Journal:  Science       Date:  2004-06-03       Impact factor: 47.728

10.  Deregulation of cyclin E in human cells interferes with prereplication complex assembly.

Authors:  Susanna Ekholm-Reed; Juan Méndez; Donato Tedesco; Anders Zetterberg; Bruce Stillman; Steven I Reed
Journal:  J Cell Biol       Date:  2004-06-14       Impact factor: 10.539

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  2 in total

1.  Nonlinear ionic pulses along microtubules.

Authors:  D L Sekulić; B M Satarić; J A Tuszynski; M V Satarić
Journal:  Eur Phys J E Soft Matter       Date:  2011-05-23       Impact factor: 1.890

2.  Lyotropic ion channel current model compared with ising model.

Authors:  Leif Matsson; Virulh Sa-Yakanit; Santipong Boribarn
Journal:  J Biol Phys       Date:  2005-12       Impact factor: 1.365

  2 in total

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