Literature DB >> 23345858

Physics of ion channels.

Serdar Kuyucak1, Turgut Bastug.   

Abstract

We review the basic physics involved in transport of ions across membrane channels in cells. Electrochemical forces that control the diffusion of ions are discussed both from microscopic and macroscopic perspectives. A case is made for use of Brownian dynamics as the minimal phenomenological model that provides a bridge between experiments and more fundamental theoretical approaches. Application of Brownian and molecular dynamics methods to channels with known molecular structures is discussed.

Keywords:  Brownian dynamics; continuum theories; ion channels; molecular dynamics; permeation models

Year:  2003        PMID: 23345858      PMCID: PMC3456178          DOI: 10.1023/A:1027309113522

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  41 in total

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Authors:  M B Partenskii; P C Jordan
Journal:  Q Rev Biophys       Date:  1992-11       Impact factor: 5.318

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Journal:  Annu Rev Biophys Biomol Struct       Date:  1994

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Authors:  G Chang; R H Spencer; A T Lee; M T Barclay; D C Rees
Journal:  Science       Date:  1998-12-18       Impact factor: 47.728

5.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity.

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Journal:  Science       Date:  1998-04-03       Impact factor: 47.728

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Authors:  B Honig; A Nicholls
Journal:  Science       Date:  1995-05-26       Impact factor: 47.728

7.  Electrostatic modeling of ion pores. Energy barriers and electric field profiles.

Authors:  P C Jordan
Journal:  Biophys J       Date:  1982-08       Impact factor: 4.033

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Authors:  P C Jordan
Journal:  Biophys J       Date:  1990-11       Impact factor: 4.033

9.  Molecular determinants of Ca2+ selectivity and ion permeation in L-type Ca2+ channels.

Authors:  J Yang; P T Ellinor; W A Sather; J F Zhang; R W Tsien
Journal:  Nature       Date:  1993-11-11       Impact factor: 49.962

10.  The Ca channel in skeletal muscle is a large pore.

Authors:  E W McCleskey; W Almers
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

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  3 in total

Review 1.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

2.  Stochastic study of the effect of ionic strength on noncovalent interactions in protein pores.

Authors:  Qitao Zhao; Dilani A Jayawardhana; Xiyun Guan
Journal:  Biophys J       Date:  2007-11-09       Impact factor: 4.033

3.  Nanopore back titration analysis of dipicolinic acid.

Authors:  Yujing Han; Shuo Zhou; Liang Wang; Xiyun Guan
Journal:  Electrophoresis       Date:  2014-10-03       Impact factor: 3.535

  3 in total

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