Literature DB >> 23345760

On the charge and molecule based summations of solvent electrostatic potentials and the validity of electrostatic linear response in water.

C Satheesan Babu1, Pei-Kun Yang, Carmay Lim.   

Abstract

Solvent-induced electrostatic potentials and field components at thesolute sites of model Na(+q)-Cs(-q) molecules were computed bysumming over either solvent charges (q-summation) or solventmolecular centers (M-summation) from molecular dynamics simulations.These were compared with values obtained by solving Poisson equation withthe dielectric boundary defined by R(eff) = (R(atom)+R(gmax) )/2.q-summation using cut-offs that are ≤ 10 Å generallyunderestimates or overestimates the magnitude of (a) the potentials and field components atNa(+q) and Cs(-q) relative to the theoretical values and (b)electrostatic solvation free energies of the dipolar solutes assuminglinear solvent response relative to the respective values from free energysimulations. Furthermore, the q-summed electric potentials showedsignificant oscillations even beyond the second hydration shell. Incontrast, the corresponding M-summed potentials plateaued after thefirst hydration shell. Although the different water molecular centersyielded different converged potential values, the dipole center producedvalues in remarkable agreement with the theoretical values for solutecharges ranging from 1 to 0.1e, indicating the existence of an a convenient molecular center for computing these quantities. In contrast to theM-summed potentials, the electrostatic field components andelectrostatic solvation free energies from linear response relationshipswere found not to be sensitive to the choice of the molecular centerfor typical cut-off distances (8 to 12 Å) used in most simulations.

Entities:  

Keywords:  M-summation; Poisson equation; continuum dielectic theory; electrostatic potentials; linear response; q-summation

Year:  2002        PMID: 23345760      PMCID: PMC3456659          DOI: 10.1023/A:1019978119707

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


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3.  Toward the correction of effective electrostatic forces in explicit-solvent molecular dynamics simulations: restraints on solvent-generated electrostatic potential and solvent polarization.

Authors:  Maria M Reif; Chris Oostenbrink
Journal:  Theor Chem Acc       Date:  2015-01-10       Impact factor: 1.702

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