Literature DB >> 23345287

Sequence conservation of the region targeted by the Abbott RealTime HBV viral load assay in clinical specimens.

Gavin A Cloherty1, James Rhoads, Thomas P Young, Neil T Parkin, Vera Holzmayer, Lilly Yuen, Carolyn Mullen.   

Abstract

The Abbott RealTime HBV assay targets the N-terminal region of the S gene. Here we analyzed the sequence variability of the assay target region from >2,100 clinical specimens. Thermodynamic modeling of the percentage of bound primer/probe at the assay annealing temperature was performed to assess the potential effect of sequence variability.

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Year:  2013        PMID: 23345287      PMCID: PMC3666792          DOI: 10.1128/JCM.03003-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  24 in total

1.  Deletions in the hepatitis B virus small envelope protein: effect on assembly and secretion of surface antigen particles.

Authors:  R Prange; R Nagel; R E Streeck
Journal:  J Virol       Date:  1992-10       Impact factor: 5.103

2.  Evaluation of performance across the dynamic range of the Abbott RealTime HIV-1 assay as compared to VERSANT HIV-1 RNA 3.0 and AMPLICOR HIV-1 MONITOR v1.5 using serial dilutions of 39 group M and O viruses.

Authors:  Priscilla Swanson; Shihai Huang; Klara Abravaya; Carmen de Mendoza; Vincent Soriano; Sushil G Devare; John Hackett
Journal:  J Virol Methods       Date:  2006-12-20       Impact factor: 2.014

3.  Performance of the automated Abbott RealTime HIV-1 assay on a genetically diverse panel of specimens from Brazil.

Authors:  Priscilla Swanson; Shihai Huang; Vera Holzmayer; Pierre Bodelle; Julie Yamaguchi; Catherine Brennan; Roberto Badaro; Carlos Brites; Klara Abravaya; Sushil G Devare; John Hackett
Journal:  J Virol Methods       Date:  2006-02-28       Impact factor: 2.014

4.  A RealTime HIV-1 viral load assay for automated quantitation of HIV-1 RNA in genetically diverse group M subtypes A-H, group O and group N samples.

Authors:  Ning Tang; Shihai Huang; John Salituro; Wai-Bing Mak; Gavin Cloherty; Julie Johanson; Yu Hong Li; George Schneider; John Robinson; John Hackett; Priscilla Swanson; Klara Abravaya
Journal:  J Virol Methods       Date:  2007-08-17       Impact factor: 2.014

5.  The first B/G intersubtype recombinant form of human immunodeficiency virus type 1 (HIV-1) identified in Germany was undetected or underquantitated by some commercial viral load assays.

Authors:  Inge von Truchsess; Barbara Harris; Hermann M Schätzl; John Hackett
Journal:  J Med Virol       Date:  2006-03       Impact factor: 2.327

6.  A cluster of human immunodeficiency virus Type 1 recombinant form escaping detection by commercial genomic amplification assays.

Authors:  Barbara Foglieni; Daniel Candotti; Irene Guarnori; Livia Raffaele; Alessandra Berzuini; Marta Spreafico; Anna Orani; Roberto Rossotti; Davide Rossi; Jean-Pierre Allain; Daniele Prati
Journal:  Transfusion       Date:  2010-11-18       Impact factor: 3.157

7.  Geographical and genetic diversity of the human hepatitis B virus.

Authors:  Fuat Kurbanov; Yasuhito Tanaka; Masashi Mizokami
Journal:  Hepatol Res       Date:  2010-01       Impact factor: 4.288

Review 8.  Hepatitis B virus genetic diversity and its impact on diagnostic assays.

Authors:  F B Hollinger
Journal:  J Viral Hepat       Date:  2007-11       Impact factor: 3.728

9.  Clinical and resistance consequences of misquantification of plasma and cerebrospinal fluid human immunodeficiency virus type 1 (HIV-1) RNA in samples from an HIV-1 subtype G-infected patient.

Authors:  Constance Delaugerre; Blandine Denis; Gilles Peytavin; Pierre Palmer; Thomas Mourez; Jerôme Le Goff; Jean-Michel Molina; François Simon
Journal:  J Clin Microbiol       Date:  2009-09-16       Impact factor: 5.948

10.  Natural polymorphism of the HIV-1 integrase gene and mutations associated with integrase inhibitor resistance.

Authors:  Max Lataillade; Jennifer Chiarella; Michael J Kozal
Journal:  Antivir Ther       Date:  2007
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  2 in total

1.  Sequence conservation of the region targeted by the Abbott RealTime HCV viral load assay.

Authors:  Gavin Cloherty; Neil Parkin; James Rhoads; Claudia Esping; Corklin Steinhart; George Schneider; Lily Yuen; John Hackett
Journal:  J Clin Microbiol       Date:  2014-01-15       Impact factor: 5.948

2.  Phylogeography and evolutionary history of hepatitis B virus genotype F in Brazil.

Authors:  Francisco C A Mello; Oscar C Araujo; Barbara V Lago; Ana Rita C Motta-Castro; Marcia Terezinha B Moraes; Selma A Gomes; Gonzalo Bello; Natalia M Araujo
Journal:  Virol J       Date:  2013-07-16       Impact factor: 4.099

  2 in total

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