Literature DB >> 23344952

The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization.

Christopher A G Söderberg1, Sreekanth Rajan, Alexander V Shkumatov, Oleksandr Gakh, Susanne Schaefer, Eva-Christina Ahlgren, Dmitri I Svergun, Grazia Isaya, Salam Al-Karadaghi.   

Abstract

The role of the mitochondrial protein frataxin in iron storage and detoxification, iron delivery to iron-sulfur cluster biosynthesis, heme biosynthesis, and aconitase repair has been extensively studied during the last decade. However, still no general consensus exists on the details of the mechanism of frataxin function and oligomerization. Here, using small-angle x-ray scattering and x-ray crystallography, we describe the solution structure of the oligomers formed during the iron-dependent assembly of yeast (Yfh1) and Escherichia coli (CyaY) frataxin. At an iron-to-protein ratio of 2, the initially monomeric Yfh1 is converted to a trimeric form in solution. The trimer in turn serves as the assembly unit for higher order oligomers induced at higher iron-to-protein ratios. The x-ray crystallographic structure obtained from iron-soaked crystals demonstrates that iron binds at the trimer-trimer interaction sites, presumably contributing to oligomer stabilization. For the ferroxidation-deficient D79A/D82A variant of Yfh1, iron-dependent oligomerization may still take place, although >50% of the protein is found in the monomeric state at the highest iron-to-protein ratio used. This demonstrates that the ferroxidation reaction controls frataxin assembly and presumably the iron chaperone function of frataxin and its interactions with target proteins. For E. coli CyaY, the assembly unit of higher order oligomers is a tetramer, which could be an effect of the much shorter N-terminal region of this protein. The results show that understanding of the mechanistic features of frataxin function requires detailed knowledge of the interplay between the ferroxidation reaction, iron-induced oligomerization, and the structure of oligomers formed during assembly.

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Year:  2013        PMID: 23344952      PMCID: PMC3605634          DOI: 10.1074/jbc.M112.442285

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  66 in total

1.  Crystal structure of human frataxin.

Authors:  S Dhe-Paganon; R Shigeta; Y I Chi; M Ristow; S E Shoelson
Journal:  J Biol Chem       Date:  2000-10-06       Impact factor: 5.157

2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  Determination of domain structure of proteins from X-ray solution scattering.

Authors:  D I Svergun; M V Petoukhov; M H Koch
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

4.  Iron-dependent self-assembly of recombinant yeast frataxin: implications for Friedreich ataxia.

Authors:  J Adamec; F Rusnak; W G Owen; S Naylor; L M Benson; A M Gacy; G Isaya
Journal:  Am J Hum Genet       Date:  2000-08-04       Impact factor: 11.025

5.  Assembly and iron-binding properties of human frataxin, the protein deficient in Friedreich ataxia.

Authors:  Patrizia Cavadini; Heather A O'Neill; Oldrich Benada; Grazia Isaya
Journal:  Hum Mol Genet       Date:  2002-02-01       Impact factor: 6.150

6.  The correlation of clinical phenotype in Friedreich ataxia with the site of point mutations in the FRDA gene.

Authors:  S M Forrest; M Knight; M B Delatycki; D Paris; R Williamson; J King; L Yeung; N Nassif; G A Nicholson
Journal:  Neurogenetics       Date:  1998-08       Impact factor: 2.660

7.  Crystal structure of Escherichia coli CyaY protein reveals a previously unidentified fold for the evolutionarily conserved frataxin family.

Authors:  S J Cho; M G Lee; J K Yang; J Y Lee; H K Song; S W Suh
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

Review 8.  Mineralization in ferritin: an efficient means of iron storage.

Authors:  N D Chasteen; P M Harrison
Journal:  J Struct Biol       Date:  1999-06-30       Impact factor: 2.867

9.  Genotype and phenotype analysis of Friedreich's ataxia compound heterozygous patients.

Authors:  M De Castro; J García-Planells; E Monrós; J Cañizares; R Vázquez-Manrique; J J Vílchez; M Urtasun; M Lucas; G Navarro; G Izquierdo; M D Moltó; F Palau
Journal:  Hum Genet       Date:  2000-01       Impact factor: 4.132

10.  Physical evidence that yeast frataxin is an iron storage protein.

Authors:  Oleksandr Gakh; Jiri Adamec; A Marquis Gacy; Ray D Twesten; Whyte G Owen; Grazia Isaya
Journal:  Biochemistry       Date:  2002-05-28       Impact factor: 3.162

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  12 in total

Review 1.  Tangled web of interactions among proteins involved in iron-sulfur cluster assembly as unraveled by NMR, SAXS, chemical crosslinking, and functional studies.

Authors:  Jin Hae Kim; Jameson R Bothe; T Reid Alderson; John L Markley
Journal:  Biochim Biophys Acta       Date:  2014-11-22

2.  Architecture of the Yeast Mitochondrial Iron-Sulfur Cluster Assembly Machinery: THE SUB-COMPLEX FORMED BY THE IRON DONOR, Yfh1 PROTEIN, AND THE SCAFFOLD, Isu1 PROTEIN.

Authors:  Wasantha Ranatunga; Oleksandr Gakh; Belinda K Galeano; Douglas Y Smith; Christopher A G Söderberg; Salam Al-Karadaghi; James R Thompson; Grazia Isaya
Journal:  J Biol Chem       Date:  2016-03-03       Impact factor: 5.157

3.  The Structure of the Complex between Yeast Frataxin and Ferrochelatase: CHARACTERIZATION AND PRE-STEADY STATE REACTION OF FERROUS IRON DELIVERY AND HEME SYNTHESIS.

Authors:  Christopher Söderberg; Mallory E Gillam; Eva-Christina Ahlgren; Gregory A Hunter; Oleksandr Gakh; Grazia Isaya; Gloria C Ferreira; Salam Al-Karadaghi
Journal:  J Biol Chem       Date:  2016-03-29       Impact factor: 5.157

4.  Altered sterol metabolism in budding yeast affects mitochondrial iron-sulfur (Fe-S) cluster synthesis.

Authors:  Diane M Ward; Opal S Chen; Liangtao Li; Jerry Kaplan; Shah Alam Bhuiyan; Selvamuthu K Natarajan; Martin Bard; James E Cox
Journal:  J Biol Chem       Date:  2018-05-17       Impact factor: 5.157

5.  Architecture of the Human Mitochondrial Iron-Sulfur Cluster Assembly Machinery.

Authors:  Oleksandr Gakh; Wasantha Ranatunga; Douglas Y Smith; Eva-Christina Ahlgren; Salam Al-Karadaghi; James R Thompson; Grazia Isaya
Journal:  J Biol Chem       Date:  2016-08-12       Impact factor: 5.157

6.  Iron-induced oligomerization of human FXN81-210 and bacterial CyaY frataxin and the effect of iron chelators.

Authors:  Eva-Christina Ahlgren; Mostafa Fekry; Mathias Wiemann; Christopher A Söderberg; Katja Bernfur; Olex Gakh; Morten Rasmussen; Peter Højrup; Cecilia Emanuelsson; Grazia Isaya; Salam Al-Karadaghi
Journal:  PLoS One       Date:  2017-12-04       Impact factor: 3.240

7.  Zinc and the iron donor frataxin regulate oligomerization of the scaffold protein to form new Fe-S cluster assembly centers.

Authors:  B K Galeano; W Ranatunga; O Gakh; D Y Smith; J R Thompson; G Isaya
Journal:  Metallomics       Date:  2017-06-21       Impact factor: 4.526

8.  SAXS and stability studies of iron-induced oligomers of bacterial frataxin CyaY.

Authors:  Mostafa Fekry; Wessen Alshokry; Przemysław Grela; Marek Tchórzewski; Eva-Christina Ahlgren; Christopher A Söderberg; Oleksandr Gakh; Grazia Isaya; Salam Al-Karadaghi
Journal:  PLoS One       Date:  2017-09-20       Impact factor: 3.240

Review 9.  Recent Advances in the Elucidation of Frataxin Biochemical Function Open Novel Perspectives for the Treatment of Friedreich's Ataxia.

Authors:  Beata Monfort; Kristian Want; Sylvain Gervason; Benoit D'Autréaux
Journal:  Front Neurosci       Date:  2022-03-02       Impact factor: 4.677

Review 10.  Investigating increasingly complex macromolecular systems with small-angle X-ray scattering.

Authors:  Bente Vestergaard; Zehra Sayers
Journal:  IUCrJ       Date:  2014-10-21       Impact factor: 4.769

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