Literature DB >> 25450980

Tangled web of interactions among proteins involved in iron-sulfur cluster assembly as unraveled by NMR, SAXS, chemical crosslinking, and functional studies.

Jin Hae Kim1, Jameson R Bothe1, T Reid Alderson1, John L Markley2.   

Abstract

Proteins containing iron-sulfur (Fe-S) clusters arose early in evolution and are essential to life. Organisms have evolved machinery consisting of specialized proteins that operate together to assemble Fe-S clusters efficiently so as to minimize cellular exposure to their toxic constituents: iron and sulfide ions. To date, the best studied system is the iron-sulfur cluster (isc) operon of Escherichia coli, and the eight ISC proteins it encodes. Our investigations over the past five years have identified two functional conformational states for the scaffold protein (IscU) and have shown that the other ISC proteins that interact with IscU prefer to bind one conformational state or the other. From analyses of the NMR spectroscopy-derived network of interactions of ISC proteins, small-angle X-ray scattering (SAXS) data, chemical crosslinking experiments, and functional assays, we have constructed working models for Fe-S cluster assembly and delivery. Future work is needed to validate and refine what has been learned about the E. coli system and to extend these findings to the homologous Fe-S cluster biosynthetic machinery of yeast and human mitochondria. This article is part of a Special Issue entitled: Fe/S proteins: Analysis, structure, function, biogenesis and diseases.
Copyright © 2014. Published by Elsevier B.V.

Entities:  

Keywords:  Conformational equilibria; Iron–sulfur cluster biosynthesis; Nuclear magnetic resonance (NMR) spectroscopy; Protein–protein interactions; Small-angle X-ray scattering (SAXS)

Mesh:

Substances:

Year:  2014        PMID: 25450980      PMCID: PMC4390431          DOI: 10.1016/j.bbamcr.2014.11.020

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  157 in total

1.  Kinetic characterization of the ATPase cycle of the molecular chaperone Hsc66 from Escherichia coli.

Authors:  J J Silberg; L E Vickery
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

2.  A mitochondrial ferredoxin is essential for biogenesis of cellular iron-sulfur proteins.

Authors:  H Lange; A Kaut; G Kispal; R Lill
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

3.  Role of the mitochondrial Hsp70s, Ssc1 and Ssq1, in the maturation of Yfh1.

Authors:  C Voisine; B Schilke; M Ohlson; H Beinert; J Marszalek; E A Craig
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

4.  Role of Saccharomyces cerevisiae ISA1 and ISA2 in iron homeostasis.

Authors:  L T Jensen; V C Culotta
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

5.  The iscS gene in Escherichia coli is required for the biosynthesis of 4-thiouridine, thiamin, and NAD.

Authors:  C T Lauhon; R Kambampati
Journal:  J Biol Chem       Date:  2000-06-30       Impact factor: 5.157

6.  IscU as a scaffold for iron-sulfur cluster biosynthesis: sequential assembly of [2Fe-2S] and [4Fe-4S] clusters in IscU.

Authors:  J N Agar; C Krebs; J Frazzon; B H Huynh; D R Dean; M K Johnson
Journal:  Biochemistry       Date:  2000-07-11       Impact factor: 3.162

7.  Evidence for the transfer of sulfane sulfur from IscS to ThiI during the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA.

Authors:  R Kambampati; C T Lauhon
Journal:  J Biol Chem       Date:  2000-04-14       Impact factor: 5.157

8.  IscS is a sulfurtransferase for the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA.

Authors:  R Kambampati; C T Lauhon
Journal:  Biochemistry       Date:  1999-12-14       Impact factor: 3.162

Review 9.  Iron-sulfur proteins: ancient structures, still full of surprises.

Authors:  H Beinert
Journal:  J Biol Inorg Chem       Date:  2000-02       Impact factor: 3.358

10.  Interaction of the iron-sulfur cluster assembly protein IscU with the Hsc66/Hsc20 molecular chaperone system of Escherichia coli.

Authors:  K G Hoff; J J Silberg; L E Vickery
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

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  17 in total

1.  Functional implications of the interaction between HscB and IscU in the biosynthesis of FeS clusters.

Authors:  Stefania Iametti; Alberto Barbiroli; Francesco Bonomi
Journal:  J Biol Inorg Chem       Date:  2015-08-06       Impact factor: 3.358

2.  Understanding the Molecular Basis of Multiple Mitochondrial Dysfunctions Syndrome 1 (MMDS1)-Impact of a Disease-Causing Gly208Cys Substitution on Structure and Activity of NFU1 in the Fe/S Cluster Biosynthetic Pathway.

Authors:  Christine Wachnowsky; Nathaniel A Wesley; Insiya Fidai; J A Cowan
Journal:  J Mol Biol       Date:  2017-02-01       Impact factor: 5.469

3.  Regulation of human Nfu activity in Fe-S cluster delivery-characterization of the interaction between Nfu and the HSPA9/Hsc20 chaperone complex.

Authors:  Christine Wachnowsky; Yushi Liu; Taejin Yoon; J A Cowan
Journal:  FEBS J       Date:  2017-12-29       Impact factor: 5.542

4.  Architecture of the Yeast Mitochondrial Iron-Sulfur Cluster Assembly Machinery: THE SUB-COMPLEX FORMED BY THE IRON DONOR, Yfh1 PROTEIN, AND THE SCAFFOLD, Isu1 PROTEIN.

Authors:  Wasantha Ranatunga; Oleksandr Gakh; Belinda K Galeano; Douglas Y Smith; Christopher A G Söderberg; Salam Al-Karadaghi; James R Thompson; Grazia Isaya
Journal:  J Biol Chem       Date:  2016-03-03       Impact factor: 5.157

Review 5.  Fe-S Cluster Hsp70 Chaperones: The ATPase Cycle and Protein Interactions.

Authors:  Rafal Dutkiewicz; Malgorzata Nowak; Elizabeth A Craig; Jaroslaw Marszalek
Journal:  Methods Enzymol       Date:  2017-08-21       Impact factor: 1.600

6.  Iron-Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein-Protein Interaction.

Authors:  Wojciech Delewski; Bogumiła Paterkiewicz; Mateusz Manicki; Brenda Schilke; Bartłomiej Tomiczek; Szymon J Ciesielski; Lukasz Nierzwicki; Jacek Czub; Rafal Dutkiewicz; Elizabeth A Craig; Jaroslaw Marszalek
Journal:  Mol Biol Evol       Date:  2015-11-05       Impact factor: 16.240

Review 7.  Iron-sulfur cluster biosynthesis and trafficking - impact on human disease conditions.

Authors:  C Wachnowsky; I Fidai; J A Cowan
Journal:  Metallomics       Date:  2018-01-24       Impact factor: 4.526

8.  Architecture of the Human Mitochondrial Iron-Sulfur Cluster Assembly Machinery.

Authors:  Oleksandr Gakh; Wasantha Ranatunga; Douglas Y Smith; Eva-Christina Ahlgren; Salam Al-Karadaghi; James R Thompson; Grazia Isaya
Journal:  J Biol Chem       Date:  2016-08-12       Impact factor: 5.157

9.  Cleavage and polyadenylation specificity factor 30: An RNA-binding zinc-finger protein with an unexpected 2Fe-2S cluster.

Authors:  Geoffrey D Shimberg; Jamie L Michalek; Abdulafeez A Oluyadi; Andria V Rodrigues; Beth E Zucconi; Heather M Neu; Shanchari Ghosh; Kanisha Sureschandra; Gerald M Wilson; Timothy L Stemmler; Sarah L J Michel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

10.  UV-light-driven prebiotic synthesis of iron-sulfur clusters.

Authors:  Claudia Bonfio; Luca Valer; Simone Scintilla; Sachin Shah; David J Evans; Lin Jin; Jack W Szostak; Dimitar D Sasselov; John D Sutherland; Sheref S Mansy
Journal:  Nat Chem       Date:  2017-07-10       Impact factor: 24.427

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