Literature DB >> 23341632

Domain-swapped chain connectivity and gated membrane access in a Fab-mediated crystal of the human TRAAK K+ channel.

Stephen G Brohawn1, Ernest B Campbell, Roderick MacKinnon.   

Abstract

TRAAK (TWIK-related arachidonic acid-stimulated K(+) channel, K2P4.1) K(+) ion channels are expressed predominantly in the nervous system to control cellular resting membrane potential and are regulated by mechanical and chemical properties of the lipid membrane. TRAAK channels are twofold symmetric, which precludes a direct extension of gating mechanisms that close canonical fourfold symmetric K(+) channels. We present the crystal structure of human TRAAK in complex with antibody antigen-binding fragments (Fabs) at 2.75-Å resolution. In contrast to a previous structure, this structure reveals a domain-swapped chain connectivity enabled by the helical cap that exchanges two opposing outer helices 180° around the channel. An unrelated conformational change of an inner helix seals a side opening to the membrane bilayer and is associated with structural changes around the K(+)-selectivity filter that may have implications for mechanosensitivity and gating of TRAAK channels.

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Year:  2013        PMID: 23341632      PMCID: PMC3568379          DOI: 10.1073/pnas.1218950110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Tight steric closure at the intracellular activation gate of a voltage-gated K(+) channel.

Authors:  D del Camino; G Yellen
Journal:  Neuron       Date:  2001-11-20       Impact factor: 17.173

2.  KCNKØ: opening and closing the 2-P-domain potassium leak channel entails "C-type" gating of the outer pore.

Authors:  N Zilberberg; N Ilan; S A Goldstein
Journal:  Neuron       Date:  2001-11-20       Impact factor: 17.173

3.  Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution.

Authors:  Y Zhou; J H Morais-Cabral; A Kaufman; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

4.  Cloning and expression of human TRAAK, a polyunsaturated fatty acids-activated and mechano-sensitive K(+) channel.

Authors:  F Lesage; F Maingret; M Lazdunski
Journal:  FEBS Lett       Date:  2000-04-14       Impact factor: 4.124

5.  Lysophosphatidic acid-operated K+ channels.

Authors:  Jean Chemin; Amanda Patel; Fabrice Duprat; Marc Zanzouri; Michel Lazdunski; Eric Honoré
Journal:  J Biol Chem       Date:  2004-11-30       Impact factor: 5.157

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  A novel mechanism for human K2P2.1 channel gating. Facilitation of C-type gating by protonation of extracellular histidine residues.

Authors:  Asi Cohen; Yuval Ben-Abu; Shelly Hen; Noam Zilberberg
Journal:  J Biol Chem       Date:  2008-05-12       Impact factor: 5.157

8.  Metabolic and thermal stimuli control K(2P)2.1 (TREK-1) through modular sensory and gating domains.

Authors:  Sviatoslav N Bagriantsev; Kimberly A Clark; Daniel L Minor
Journal:  EMBO J       Date:  2012-06-22       Impact factor: 11.598

9.  The pore structure and gating mechanism of K2P channels.

Authors:  Paula L Piechotta; Markus Rapedius; Phillip J Stansfeld; Murali K Bollepalli; Gunter Ehrlich; Gunter Erhlich; Isabelle Andres-Enguix; Hariolf Fritzenschaft; Niels Decher; Mark S P Sansom; Stephen J Tucker; Thomas Baukrowitz
Journal:  EMBO J       Date:  2011-08-05       Impact factor: 14.012

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  60 in total

Review 1.  Temperature sensitivity of two-pore (K2P) potassium channels.

Authors:  Eve R Schneider; Evan O Anderson; Elena O Gracheva; Sviatoslav N Bagriantsev
Journal:  Curr Top Membr       Date:  2014       Impact factor: 3.049

Review 2.  K₂p channels in plants and animals.

Authors:  Wendy González; Braulio Valdebenito; Julio Caballero; Gonzalo Riadi; Janin Riedelsberger; Gonzalo Martínez; David Ramírez; Leandro Zúñiga; Francisco V Sepúlveda; Ingo Dreyer; Michael Janta; Dirk Becker
Journal:  Pflugers Arch       Date:  2014-11-06       Impact factor: 3.657

3.  Interfacial Binding Sites for Cholesterol on Kir, Kv, K2P, and Related Potassium Channels.

Authors:  Anthony G Lee
Journal:  Biophys J       Date:  2020-06-04       Impact factor: 4.033

Review 4.  Bacterial voltage-gated sodium channels (BacNa(V)s) from the soil, sea, and salt lakes enlighten molecular mechanisms of electrical signaling and pharmacology in the brain and heart.

Authors:  Jian Payandeh; Daniel L Minor
Journal:  J Mol Biol       Date:  2014-08-23       Impact factor: 5.469

Review 5.  Feeling the hidden mechanical forces in lipid bilayer is an original sense.

Authors:  Andriy Anishkin; Stephen H Loukin; Jinfeng Teng; Ching Kung
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-21       Impact factor: 11.205

Review 6.  Molecular aspects of structure, gating, and physiology of pH-sensitive background K2P and Kir K+-transport channels.

Authors:  Francisco V Sepúlveda; L Pablo Cid; Jacques Teulon; María Isabel Niemeyer
Journal:  Physiol Rev       Date:  2015-01       Impact factor: 37.312

Review 7.  The role of protein-protein interactions in the intracellular traffic of the potassium channels TASK-1 and TASK-3.

Authors:  Markus Kilisch; Olga Lytovchenko; Blanche Schwappach; Vijay Renigunta; Jürgen Daut
Journal:  Pflugers Arch       Date:  2015-01-07       Impact factor: 3.657

Review 8.  Much more than a leak: structure and function of K₂p-channels.

Authors:  Vijay Renigunta; Günter Schlichthörl; Jürgen Daut
Journal:  Pflugers Arch       Date:  2015-03-21       Impact factor: 3.657

9.  K2P channel gating mechanisms revealed by structures of TREK-2 and a complex with Prozac.

Authors:  Yin Yao Dong; Ashley C W Pike; Alexandra Mackenzie; Conor McClenaghan; Prafulla Aryal; Liang Dong; Andrew Quigley; Mariana Grieben; Solenne Goubin; Shubhashish Mukhopadhyay; Gian Filippo Ruda; Michael V Clausen; Lishuang Cao; Paul E Brennan; Nicola A Burgess-Brown; Mark S P Sansom; Stephen J Tucker; Elisabeth P Carpenter
Journal:  Science       Date:  2015-03-13       Impact factor: 47.728

10.  Mechanosensitivity is mediated directly by the lipid membrane in TRAAK and TREK1 K+ channels.

Authors:  Stephen G Brohawn; Zhenwei Su; Roderick MacKinnon
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

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