Literature DB >> 23340764

Anammox bacterial populations in deep marine hypersaline gradient systems.

Sara Borin1, Francesca Mapelli, Eleonora Rolli, Bongkeun Song, Craig Tobias, Markus C Schmid, Gert J De Lange, Gert J Reichart, Stefan Schouten, Mike Jetten, Daniele Daffonchio.   

Abstract

To extend the knowledge of anaerobic ammonium oxidation (anammox) habitats, bacterial communities were examined in two hypersaline sulphidic basins in Eastern Mediterranean Sea. The 2 m thick seawater-brine haloclines of the deep anoxic hypersaline basins Bannock and L'Atalante were sampled in intervals of 10 cm with increasing salinity. (15)N isotope pairing incubation experiments showed the production of (29)N2 and (30)N2 gases in the chemoclines, ranging from 6.0 to 9.2 % salinity of the L'Atalante basin. Potential anammox rates ranged from 2.52 to 49.65 nmol N2 L(-1) day(-1) while denitrification was a major N2 production pathway, accounting for more than 85.5 % of total N2 production. Anammox-related 16S rRNA genes were detected along the L'Atalante and Bannock haloclines up to 24 % salinity, and the amplification of the hydrazine synthase genes (hzsA) further confirmed the presence of anammox bacteria in Bannock. Fluorescence in situ hybridisation and sequence analysis of 16S rRNA genes identified representatives of the marine anammox genus 'Candidatus Scalindua' and putatively new operational taxonomic units closely affiliated to sequences retrieved in marine environments that have documented anammox activity. 'Scalindua brodae' like sequences constituted up to 84.4 % of the sequences retrieved from Bannock. The anammox community in L'Atalante was different than in Bannock and was stratified according to salinity increase. This study putatively extends anammox bacterial habitats to extremely saline sulphidic ecosystems.

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Year:  2013        PMID: 23340764     DOI: 10.1007/s00792-013-0516-x

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  36 in total

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Authors:  Paul W J J van der Wielen; Henk Bolhuis; Sara Borin; Daniele Daffonchio; Cesare Corselli; Laura Giuliano; Giuseppe D'Auria; Gert J de Lange; Andreas Huebner; Sotirios P Varnavas; John Thomson; Christian Tamburini; Danielle Marty; Terry J McGenity; Kenneth N Timmis
Journal:  Science       Date:  2005-01-07       Impact factor: 47.728

2.  Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production.

Authors:  Jack van de Vossenberg; Jayne E Rattray; Wim Geerts; Boran Kartal; Laura van Niftrik; Elly G van Donselaar; Jaap S Sinninghe Damsté; Marc Strous; Mike S M Jetten
Journal:  Environ Microbiol       Date:  2008-05-06       Impact factor: 5.491

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  Hydrazine synthase, a unique phylomarker with which to study the presence and biodiversity of anammox bacteria.

Authors:  Harry R Harhangi; Mathilde Le Roy; Theo van Alen; Bao-Lan Hu; Joost Groen; Boran Kartal; Susannah G Tringe; Zhe-Xue Quan; Mike S M Jetten; Huub J M Op den Camp
Journal:  Appl Environ Microbiol       Date:  2011-12-02       Impact factor: 4.792

5.  Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation.

Authors:  Marcel M M Kuypers; Gaute Lavik; Dagmar Woebken; Markus Schmid; Bernhard M Fuchs; Rudolf Amann; Bo Barker Jørgensen; Mike S M Jetten
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-20       Impact factor: 11.205

6.  Production of N(2) through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments.

Authors:  Bo Thamdrup; Tage Dalsgaard
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

7.  Candidatus "Scalindua brodae", sp. nov., Candidatus "Scalindua wagneri", sp. nov., two new species of anaerobic ammonium oxidizing bacteria.

Authors:  Markus Schmid; Kerry Walsh; Rick Webb; W Irene C Rijpstra; Katinka van de Pas-Schoonen; Mark Jan Verbruggen; Thomas Hill; Bruce Moffett; John Fuerst; Stefan Schouten; Jaap S Sinninghe Damsté; James Harris; Phil Shaw; Mike Jetten; Marc Strous
Journal:  Syst Appl Microbiol       Date:  2003-11       Impact factor: 4.022

8.  Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany).

Authors:  M Robert Hamersley; Dagmar Woebken; Bertram Boehrer; Martin Schultze; Gaute Lavik; Marcel M M Kuypers
Journal:  Syst Appl Microbiol       Date:  2009-08-28       Impact factor: 4.022

9.  A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones.

Authors:  Dagmar Woebken; Phyllis Lam; Marcel M M Kuypers; S Wajih A Naqvi; Boran Kartal; Marc Strous; Mike S M Jetten; Bernhard M Fuchs; Rudolf Amann
Journal:  Environ Microbiol       Date:  2008-05-27       Impact factor: 5.491

10.  Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity.

Authors:  Markus C Schmid; Nils Risgaard-Petersen; Jack van de Vossenberg; Marcel M M Kuypers; Gaute Lavik; Jan Petersen; Stefan Hulth; Bo Thamdrup; Don Canfield; Tage Dalsgaard; Søren Rysgaard; Mikael K Sejr; Marc Strous; Huub J M Op den Camp; Mike S M Jetten
Journal:  Environ Microbiol       Date:  2007-06       Impact factor: 5.491

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  8 in total

1.  Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.

Authors:  Maria G Pachiadaki; Michail M Yakimov; Violetta LaCono; Edward Leadbetter; Virginia Edgcomb
Journal:  ISME J       Date:  2014-06-20       Impact factor: 10.302

2.  Shotgun metagenomic data reveals significant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone.

Authors:  Laura Villanueva; Daan R Speth; Theo van Alen; Alexander Hoischen; Mike S M Jetten
Journal:  Front Microbiol       Date:  2014-02-05       Impact factor: 5.640

3.  Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria.

Authors:  Daan R Speth; Ilias Lagkouvardos; Yong Wang; Pei-Yuan Qian; Bas E Dutilh; Mike S M Jetten
Journal:  Microb Ecol       Date:  2017-01-10       Impact factor: 4.552

4.  Trehalose as an osmolyte in Candidatus Accumulibacter phosphatis.

Authors:  Danny R de Graaff; Mark C M van Loosdrecht; Mario Pronk
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5.  Geochemical transition zone powering microbial growth in subsurface sediments.

Authors:  Rui Zhao; José M Mogollón; Sophie S Abby; Christa Schleper; Jennifer F Biddle; Desiree L Roerdink; Ingunn H Thorseth; Steffen L Jørgensen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-07       Impact factor: 11.205

6.  Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline.

Authors:  Grégoire Michoud; David Kamanda Ngugi; Alan Barozzi; Giuseppe Merlino; Maria Ll Calleja; Antonio Delgado-Huertas; Xosé Anxelu G Morán; Daniele Daffonchio
Journal:  ISME J       Date:  2021-03-01       Impact factor: 11.217

7.  Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin.

Authors:  Lina Russ; Boran Kartal; Huub J M Op den Camp; Martina Sollai; Julie Le Bruchec; Jean-Claude Caprais; Anne Godfroy; Jaap S Sinninghe Damsté; Mike S M Jetten
Journal:  Front Microbiol       Date:  2013-08-02       Impact factor: 5.640

8.  The hunt for the most-wanted chemolithoautotrophic spookmicrobes.

Authors:  Michiel H In 't Zandt; Anniek Ee de Jong; Caroline P Slomp; Mike Sm Jetten
Journal:  FEMS Microbiol Ecol       Date:  2018-06-01       Impact factor: 4.194

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