Literature DB >> 23332705

Unnatural amino acid mutagenesis of GPCRs using amber codon suppression and bioorthogonal labeling.

Thomas Huber1, Saranga Naganathan, He Tian, Shixin Ye, Thomas P Sakmar.   

Abstract

To advance dynamic, temporal, and kinetic studies of the G protein-coupled receptor (GPCR) signalosome, new approaches are required to introduce non- or minimally perturbing labels or probes into expressed receptors. We report here a series of methods that are based on unnatural amino acid mutagenesis of GPCRs using amber codon suppression technology. We show that labeling reactions at genetically introduced keto moieties (p-acetyl-L-Phe/AcF and p-benzoyl-L-Phe/BzF) are not completely bioorthogonal due to protein oxidation, which causes high background. However, labeling reactions that target p-azido-L-Phe (azF) using the Staudinger-Bertozzi ligation and the strain-promoted alkyne-azide cycloaddition are bioorthogonal and are satisfactory for introducing labels or probes at near quantitative efficiency under mild labeling conditions. To our knowledge, this is the first report of a site-specific modification of an azF residue with a dibenzocyclooctyne-derivatized fluorophore. The methodologies we discuss are general, in that they can be applied in principle to any amino acid position in any expressed GPCR.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23332705     DOI: 10.1016/B978-0-12-391861-1.00013-7

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  17 in total

1.  The Energetics of Chromophore Binding in the Visual Photoreceptor Rhodopsin.

Authors:  He Tian; Thomas P Sakmar; Thomas Huber
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

2.  Disulfide Trapping for Modeling and Structure Determination of Receptor: Chemokine Complexes.

Authors:  Irina Kufareva; Martin Gustavsson; Lauren G Holden; Ling Qin; Yi Zheng; Tracy M Handel
Journal:  Methods Enzymol       Date:  2016-01-13       Impact factor: 1.600

Review 3.  A molecular engineering toolbox for the structural biologist.

Authors:  Galia T Debelouchina; Tom W Muir
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

Review 4.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

5.  Bioorthogonal fluorescent labeling of functional G-protein-coupled receptors.

Authors:  He Tian; Saranga Naganathan; Manija A Kazmi; Thue W Schwartz; Thomas P Sakmar; Thomas Huber
Journal:  Chembiochem       Date:  2014-07-18       Impact factor: 3.164

6.  Optimizing the Genetic Incorporation of Chemical Probes into GPCRs for Photo-crosslinking Mapping and Bioorthogonal Chemistry in Live Mammalian Cells.

Authors:  Robert Serfling; Lisa Seidel; Thore Böttke; Irene Coin
Journal:  J Vis Exp       Date:  2018-04-09       Impact factor: 1.355

7.  Micelle-Enhanced Bioorthogonal Labeling of Genetically Encoded Azido Groups on the Lipid-Embedded Surface of a GPCR.

Authors:  He Tian; Thomas P Sakmar; Thomas Huber
Journal:  Chembiochem       Date:  2015-05-11       Impact factor: 3.164

8.  Genetically encoding a light switch in an ionotropic glutamate receptor reveals subunit-specific interfaces.

Authors:  Shujia Zhu; Morgane Riou; C Andrea Yao; Stéphanie Carvalho; Pamela C Rodriguez; Olivier Bensaude; Pierre Paoletti; Shixin Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-08       Impact factor: 11.205

9.  Ghrelin receptor conformational dynamics regulate the transition from a preassembled to an active receptor:Gq complex.

Authors:  Marjorie Damian; Sophie Mary; Mathieu Maingot; Céline M'Kadmi; Didier Gagne; Jean-Philippe Leyris; Séverine Denoyelle; Gérald Gaibelet; Laurent Gavara; Mauricio Garcia de Souza Costa; David Perahia; Eric Trinquet; Bernard Mouillac; Ségolène Galandrin; Céline Galès; Jean-Alain Fehrentz; Nicolas Floquet; Jean Martinez; Jacky Marie; Jean-Louis Banères
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

Review 10.  Molecular Biology of Microbial Rhodopsins.

Authors:  Martin Engelhard
Journal:  Methods Mol Biol       Date:  2022
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