Literature DB >> 23329895

On the Origins of the Linear Free Energy Relationships: Exploring the Nature of the Off-Diagonal Coupling Elements in S(N)2 Reactions.

Edina Rosta1, Arieh Warshel.   

Abstract

Understanding the relationship between the adiabatic free energy profiles of chemical reactions and the underlining diabatic states is central to the description of chemical reactivity. The diabatic states form the theoretical basis of Linear Free Energy Relationships (LFERs) and thus play a major role in physical organic chemistry and related fields. However, the theoretical justification for some of the implicit LFER assumptions has not been fully established by quantum mechanical studies. This study follows our earlier works(1,2) and uses the ab initio frozen density functional theory (FDFT) method(3) to evaluate both the diabatic and adiabatic free energy surfaces and to determine the corresponding off-diagonal coupling matrix elements for a series of S(N)2 reactions. It is found that the off-diagonal coupling matrix elements are almost the same regardless of the nucleophile and the leaving group but change upon changing the central group. Furthermore, it is also found that the off diagonal elements are basically the same in gas phase and in solution, even when the solvent is explicitly included in the ab initio calculations. Furthermore, our study establishes that the FDFT diabatic profiles are parabolic to a good approximation thus providing a first principle support to the origin of LFER. These findings further support the basic approximation of the EVB treatment.

Entities:  

Year:  2012        PMID: 23329895      PMCID: PMC3544163          DOI: 10.1021/ct2009329

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  37 in total

1.  Prediction of reorganization free energies for biological electron transfer: a comparative study of Ru-modified cytochromes and a 4-helix bundle protein.

Authors:  Varomyalin Tipmanee; Harald Oberhofer; Mina Park; Kwang S Kim; Jochen Blumberger
Journal:  J Am Chem Soc       Date:  2010-11-05       Impact factor: 15.419

2.  An explicit quantum chemical method for modeling large solvation shells applied to aminocoumarin C151.

Authors:  Johannes Neugebauer; Christoph R Jacob; Tomasz A Wesolowski; Evert Jan Baerends
Journal:  J Phys Chem A       Date:  2005-09-01       Impact factor: 2.781

3.  Using the constrained DFT approach in generating diabatic surfaces and off diagonal empirical valence bond terms for modeling reactions in condensed phases.

Authors:  Gongyi Hong; Edina Rosta; Arieh Warshel
Journal:  J Phys Chem B       Date:  2006-10-05       Impact factor: 2.991

4.  On the mechanism of hydrolysis of phosphate monoesters dianions in solutions and proteins.

Authors:  Marco Klähn; Edina Rosta; Arieh Warshel
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

5.  Reaction coordinates for electron transfer reactions.

Authors:  Jayendran C Rasaiah; Jianjun Zhu
Journal:  J Chem Phys       Date:  2008-12-07       Impact factor: 3.488

6.  Constrained density functional theory based configuration interaction improves the prediction of reaction barrier heights.

Authors:  Qin Wu; Benjamin Kaduk; Troy Van Voorhis
Journal:  J Chem Phys       Date:  2009-01-21       Impact factor: 3.488

7.  Density dependence of the dielectric constant of rare-gas crystals.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-10-15

Review 8.  Electron transfer in proteins.

Authors:  H B Gray; J R Winkler
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

Review 9.  Calculations of electrostatic interactions in biological systems and in solutions.

Authors:  A Warshel; S T Russell
Journal:  Q Rev Biophys       Date:  1984-08       Impact factor: 5.318

10.  Charge constrained density functional molecular dynamics for simulation of condensed phase electron transfer reactions.

Authors:  Harald Oberhofer; Jochen Blumberger
Journal:  J Chem Phys       Date:  2009-08-14       Impact factor: 3.488

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  5 in total

1.  Equilibrium fluctuation relations for voltage coupling in membrane proteins.

Authors:  Ilsoo Kim; Arieh Warshel
Journal:  Biochim Biophys Acta       Date:  2015-08-17

2.  A Microscopic Capacitor Model of Voltage Coupling in Membrane Proteins: Gating Charge Fluctuations in Ci-VSD.

Authors:  Ilsoo Kim; Arieh Warshel
Journal:  J Phys Chem B       Date:  2016-01-14       Impact factor: 2.991

3.  Quantum mechanical analysis of nonenzymatic nucleotidyl transfer reactions: kinetic and thermodynamic effects of β-γ bridging groups of dNTP substrates.

Authors:  Zheng Zhang; Josh Eloge; Jan Florián
Journal:  Biochemistry       Date:  2014-06-17       Impact factor: 3.162

4.  Conformational diversity and enantioconvergence in potato epoxide hydrolase 1.

Authors:  P Bauer; Å Janfalk Carlsson; B A Amrein; D Dobritzsch; M Widersten; S C L Kamerlin
Journal:  Org Biomol Chem       Date:  2016-04-06       Impact factor: 3.876

5.  Uncovering the Role of Key Active-Site Side Chains in Catalysis: An Extended Brønsted Relationship for Substrate Deprotonation Catalyzed by Wild-Type and Variants of Triosephosphate Isomerase.

Authors:  Yashraj S Kulkarni; Tina L Amyes; John P Richard; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2019-09-25       Impact factor: 15.419

  5 in total

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