Literature DB >> 19691372

Charge constrained density functional molecular dynamics for simulation of condensed phase electron transfer reactions.

Harald Oberhofer1, Jochen Blumberger.   

Abstract

We present a plane-wave basis set implementation of charge constrained density functional molecular dynamics (CDFT-MD) for simulation of electron transfer reactions in condensed phase systems. Following the earlier work of Wu and Van Voorhis [Phys. Rev. A 72, 024502 (2005)], the density functional is minimized under the constraint that the charge difference between donor and acceptor is equal to a given value. The classical ion dynamics is propagated on the Born-Oppenheimer surface of the charge constrained state. We investigate the dependence of the constrained energy and of the energy gap on the definition of the charge and present expressions for the constraint forces. The method is applied to the Ru2+-Ru3+ electron self-exchange reaction in aqueous solution. Sampling the vertical energy gap along CDFT-MD trajectories and correcting for finite size effects, a reorganization free energy of 1.6 eV is obtained. This is 0.1-0.2 eV lower than a previous estimate based on a continuum model for solvation. The smaller value for the reorganization free energy can be explained by the fact that the Ru-O distances of the divalent and trivalent Ru hexahydrates are predicted to be more similar in the electron transfer complex than for the separated aqua ions.

Entities:  

Year:  2009        PMID: 19691372     DOI: 10.1063/1.3190169

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  7 in total

Review 1.  A hybrid approach to simulation of electron transfer in complex molecular systems.

Authors:  Tomáš Kubař; Marcus Elstner
Journal:  J R Soc Interface       Date:  2013-07-24       Impact factor: 4.118

2.  Topological analyses of time-dependent electronic structures: application to electron-transfers in methionine enkephalin.

Authors:  Julien Pilmé; Eleonora Luppi; Jacqueline Bergès; Chantal Houée-Lévin; Aurélien de la Lande
Journal:  J Mol Model       Date:  2014-07-25       Impact factor: 1.810

3.  Implementation and Validation of Constrained Density Functional Theory Forces in the CP2K Package.

Authors:  Christian S Ahart; Kevin M Rosso; Jochen Blumberger
Journal:  J Chem Theory Comput       Date:  2022-06-14       Impact factor: 6.578

4.  On the Origins of the Linear Free Energy Relationships: Exploring the Nature of the Off-Diagonal Coupling Elements in S(N)2 Reactions.

Authors:  Edina Rosta; Arieh Warshel
Journal:  J Chem Theory Comput       Date:  2012-03-29       Impact factor: 6.006

5.  Fragment-based Quantum Mechanical/Molecular Mechanical Simulations of Thermodynamic and Kinetic Process of the Ru2+-Ru3+ Self-Exchange Electron Transfer.

Authors:  Xiancheng Zeng; Xiangqian Hu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2012-12-11       Impact factor: 6.006

Review 6.  Multi-haem cytochromes in Shewanella oneidensis MR-1: structures, functions and opportunities.

Authors:  Marian Breuer; Kevin M Rosso; Jochen Blumberger; Julea N Butt
Journal:  J R Soc Interface       Date:  2015-01-06       Impact factor: 4.118

7.  Constrained DFT for Molecular Junctions.

Authors:  Linda Angela Zotti; Wynand Dednam; Enrico B Lombardi; Juan Jose Palacios
Journal:  Nanomaterials (Basel)       Date:  2022-04-06       Impact factor: 5.076

  7 in total

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