| Literature DB >> 23326532 |
Lei Liu1, Yanyan Cao, Guanglin Cui, Zongzhe Li, Jing Sun, Lina Zhang, Chen Chen, Yan Wang, Peihua Wang, Hu Ding, Dao Wen Wang.
Abstract
BACKGROUND: Rho-kinase (ROCK) has been shown to play an important role in cardiovascular disease such as coronary artery disease (CAD) and hypertension. Recently, common variants of ROCK2 have been reported to influence blood pressure, but the relationship between common ROCK2 variants and cardiovascular disease has not been extensively studied in the Chinese population.Entities:
Mesh:
Substances:
Year: 2013 PMID: 23326532 PMCID: PMC3543257 DOI: 10.1371/journal.pone.0053905
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Sequence of probes and primers sets or relative order information.
| rs ID | Primer sequences (5′→3′) | Allele | Allelic probes (5′→3′) |
| rs978906 | |||
| Foward |
| A | FAM-ACACTACAATGCACACAA-MGB |
| Reverse |
| G | HEX-CACACTACAGTGCACACA–MGB |
| rs2230774 | |||
| Foward |
| C | FAM-ATGGAATCAGTTTCTCTAC-MGB |
| Reverse |
| A | HEX-ATGGAATCATTTTCTCTAC-MGB |
| rs56304104 | |||
| Foward |
| A | FAM- ATTATGGCTTTTGCCAAT-MGB |
| Reverse |
| G | HEX-TATTATGGCCTTTGCCAAT–MGB |
Abbreviations: FAM, 6-carboxyfluorescein; HEX, hexachloro-6-carboxyfluorescein; MGB, minor groove binder probe.
General characteristics of CAD patients and controls.
| Variable | Controls | Cases |
| N (male %) | 1267 (55.2%) | 1344 (76.7%) |
| Age (years) | 60.5±8.5 | 60.4±10.2 |
| BMI (kg/m2) | 24.4±3.4 | 24.4±3.2 |
| TC (mmol/l) | 4.22±1.08 | 4.37±1.07 |
| TG (mmol/l) | 1.79±2.08 | 1.84±1.27 |
| HDL-C (mmol/l) | 1.16±0.72 | 1.05±0.28 |
| LDL-C (mmol/l) | 2.40±0.98 | 2.47±0.87 |
| FG (mmol/l) | 4.9±1.7 | 6.4±2.9 |
| BUN (mmol/l) | 5.8±2.4 | 6.2±2.1 |
| Cr (umol/l) | 73.9±22.5 | 79.1±24.7 |
| UA (umol/l) | 327.3±98.5 | 351.5±102.3 |
| Hyperlipidemia (%) | 20.8 | 31.6 |
| Hypertension (%) | 26.8 | 57.1 |
| Diabetes mellitus (%) | 6.3 | 19.3 |
| Smokers (%) | 32.8 | 56.3 |
| Drinking (%) | 26.5 | 40.4 |
| Family history of CAD (%) | 3.6 | 7.5 |
Abbreviations: BMI, body mass index; TC, total cholesterol; TG, triglyceride; HDL-C, high-density lipoprotein cholesterol; LDL-C, low-density lipoprotein cholesterol; FG, fasting glucose; BUN, blood urea nitrogen; Cr, creatinine; UA, uric acid.
P<0.01 cases vs. controls
Frequency of ROCK2 functional polymorphisms.
| dbSNP | Funcation | Position | Alleles | MAF |
| rs71932930 | 3′-UTR | Chr2∶11239606 | −/CAAAAA | 0.43 |
| rs73915393 | 3′-UTR | Chr2∶11240547 | G/A | 0.03 |
| rs978906 | 3′-UTR | Chr2∶11240727 | A/G | 0.41 |
| rs2230775 | Cds-synon | Chr2∶11249859 | G/T | 0.03 |
| rs55839233 | Cds-synon | Chr2∶11251835 | T/G | 0.01 |
| rs2230774 | Thr431Asn | Chr2∶11276571 | C/A | 0.42 |
| rs56304104 | Cds-synon | Chr2∶11307265 | G/A | 0.05 |
| rs1130157 | Arg83Lys | Chr2∶11344192 | G/A | 0.01 |
Abbreviations: MAF, minor allele frequency; 3′-UTR, 3′-untranslated region.
Position is base-pair location in NCBI build 37.1 (GRCh37).
Figure 1Graphical representation of SNPs in Haploview linkage disequilibrium (LD) graph of the ROCK2 gene.
Pairwise LD coefficients D′×100 were generated by Haploview 4.0 from the genotype data on 48 random controls and shown in each cell (D′ values of 1.0 are not shown). The standard colour scheme of Haploview was applied for LD colour display; logarithm of odds (LOD) score ≧2 and D′ <1, shown in pink/red; LOD score <2 and D′ <1 shown in blue/white.
Polymorphisms associations with coronary artery disease in our case–control study.
| Frequency | Dominant model | Additive model | Recessive model | |||||
| SNPs/genotype | Cases (n) | Controls (n) | ORs (95%CI) |
| ORs (95%CI) |
| ORs (95%CI) |
|
| rs978906 | ||||||||
| A/A | 445 | 402 | ||||||
| A/G | 654 | 620 | ||||||
| G/G | 245 | 245 | ||||||
| MAF (%) | 0.43 | 0.44 | 0.93 (0.77–1.13) | 0.60 | 0.92 (0.72–1.20) | 0.63 | 0.96 (0.75–1.20) | 0.73 |
| rs2230774 | ||||||||
| C/C | 444 | 387 | ||||||
| C/A | 648 | 638 | ||||||
| A/A | 252 | 242 | ||||||
| MAF (%) | 0.43 | 0.44 | 0.87 (0.72–1.08) | 0.22 | 0.90 (0.70–1.16) | 0.47 | 0.95 (0.73–1.19) | 0.85 |
| rs56304104 | ||||||||
| G/G | 1224 | 1145 | ||||||
| G/A | 116 | 120 | ||||||
| A/A | 4 | 2 | ||||||
| MAF (%) | 0.05 | 0.05 | 0.97 (0.71–1.30) | 0.81 | 0.97 (0.70–1.31) | 0.83 | –– | |
Abbreviations: MAF, minor allele frequency; CI, confidence interval; ORs, odds ratios; ORs (95%CI) and P value were computed with multivariate logistic regression analysis by adjusting for age, sex, BMI, hypertension, diabetes, hyperlipidemia, smoking status, glucose, family history of cardiovascular diseases and renal function.
Association between ROCK2 polymorphisms and blood pressure values in 927 health control subjects.
| SBP | DBP | |||||
| SNPs | Mean (SD) | β (SE) |
| Mean (SD) | β (SE) |
|
| rs978906 | ||||||
| A/A | 123.7 (11.6) | 80.7 (7.5) | ||||
| A/G | 123.9 (11.7) | 80.4 (7.8) | ||||
| G/G | 123.7 (12.6) | 0.06 (0.55) | 0.92 | 79.8 (7.9) | −0.44(0.36) | 0.22 |
| rs2230774 | ||||||
| C/C | 124.4 (12.5) | 80.2 (8.1) | ||||
| C/A | 123.6 (11.7) | 80.3 (7.7) | ||||
| A/A | 123.4 (11.1) | −0.51 (0.57) | 0.37 | 80.7 (7.2) | 0.22(0.37) | 0.56 |
| rs56304104 | ||||||
| G/G | 124.0 (11.7) | 80.5 (7.7) | ||||
| G/A+A/A | 121.7 (13.4) | −2.30 (1.36) | 0.09 | 79.6 (7.9) | −0.89(0.88) | 0.31 |
Abbreviations: SBP, systolic blood pressure; DBP, Diastolic blood pressure; P value of the blood pressure levels was calculated by multiple linear regression model adjusted for age, sex, BMI and smoking status; A recessive model was used for rs56304104 (MAF <5%), and an additive model was used for rs978906 and rs2230774 (MAF >5%).
Association of ROCK2 with the severity of coronary artery disease.
| SNPs | 3VD n (%) | 2VD +1VD n (%) | 1VD n (%) | 2VD +3VD n (%) | Gensini score |
| rs978906 | |||||
| A/A | 109 (33.6) | 215 (66.4) | 104 (32.1) | 220 (67.9) | 32.0 (15.3, 52.8) |
| A/G | 188 (39.5) | 288 (60.5) | 138 (29.0) | 338 (71.0) | 32.0 (16.0, 56.0) |
| G/G | 63 (33.5) | 125 (66.5) | 71 (37.8) | 117 (62.2) | 28.0 (12.3, 50.8) |
| Trend | 0.74 | 0.30 | |||
|
| 0.16 | 0.08 | 0.31 | ||
| rs2230774 | |||||
| C/C | 126 (39.0) | 197 (61.0) | 92 (28.5) | 231 (71.5) | 36.0 (20.0, 58.0) |
| C/A | 172 (36.4) | 301 (63.6) | 154 (32.6) | 319 (67.4) | 30.0 (13.5, 52.0) |
| A/A | 62 (32.3) | 130 (67.7) | 67 (34.9) | 125 (63.1) | 28.0 (13.3, 52.0) |
| Trend | 0.13 | 0.11 | |||
|
| 0.31 | 0.27 | 0.07 | ||
| rs56304104 | |||||
| G/G | 330 (36.5) | 573 (63.5) | 284 (31.5) | 619 (68.5) | 32.0 (16.0, 54.0) |
| G/A+A/A | 30 (35.3) | 55 (64.7) | 29 (34.1) | 56 (65.9) | 32.0 (12.0, 54.0) |
| Trend | 0.82 | 0.68 | |||
|
| 0.82 | 0.68 | 0.70 | ||
Abbreviations: 1VD = 1-vessel disease; 2VD = 2-vessel disease; 3VD = 3-vessel disease; Variables are given as n (%) or medians (quartiles), using nonparametric Kruskal-wallis for continuous variables and trend χ2 test and χ2 test for categorical variables.