Literature DB >> 23325767

Quantitative glycomics strategies.

Yehia Mechref1, Yunli Hu, Janie L Desantos-Garcia, Ahmed Hussein, Haixu Tang.   

Abstract

The correlations between protein glycosylation and many biological processes and diseases are increasing the demand for quantitative glycomics strategies enabling sensitive monitoring of changes in the abundance and structure of glycans. This is currently attained through multiple strategies employing several analytical techniques such as capillary electrophoresis, liquid chromatography, and mass spectrometry. The detection and quantification of glycans often involve labeling with ionic and/or hydrophobic reagents. This step is needed in order to enhance detection in spectroscopic and mass spectrometric measurements. Recently, labeling with stable isotopic reagents has also been presented as a very viable strategy enabling relative quantitation. The different strategies available for reliable and sensitive quantitative glycomics are herein described and discussed.

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Year:  2013        PMID: 23325767      PMCID: PMC3617334          DOI: 10.1074/mcp.R112.026310

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  93 in total

Review 1.  Advances in fluorescence derivatization methods for high-performance liquid chromatographic analysis of glycoprotein carbohydrates.

Authors:  Kalyan R Anumula
Journal:  Anal Biochem       Date:  2005-10-17       Impact factor: 3.365

2.  Fast atom bombardment mass spectrometric strategies for characterizing carbohydrate-containing biopolymers.

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Journal:  Biomed Environ Mass Spectrom       Date:  1988-10

3.  Alterations in the serum glycome due to metastatic prostate cancer.

Authors:  Zuzana Kyselova; Yehia Mechref; Mohammad M Al Bataineh; Lacey E Dobrolecki; Robert J Hickey; Jake Vinson; Christopher J Sweeney; Milos V Novotny
Journal:  J Proteome Res       Date:  2007-04-14       Impact factor: 4.466

4.  Stable-isotope labeled hydrophobic hydrazide reagents for the relative quantification of N-linked glycans by electrospray ionization mass spectrometry.

Authors:  S Hunter Walker; Januka Budhathoki-Uprety; Bruce M Novak; David C Muddiman
Journal:  Anal Chem       Date:  2011-08-01       Impact factor: 6.986

5.  Evolutionary differences in glycosaminoglycan fine structure detected by quantitative glycan reductive isotope labeling.

Authors:  Roger Lawrence; Sara K Olson; Robert E Steele; Lianchun Wang; Rahul Warrior; Richard D Cummings; Jeffrey D Esko
Journal:  J Biol Chem       Date:  2008-09-24       Impact factor: 5.157

6.  Analysis of gamma-globulin mobility on routine clinical CE equipment: exploring its molecular basis and potential clinical utility.

Authors:  Dieter Vanderschaeghe; Evi Debruyne; Hans Van Vlierberghe; Nico Callewaert; Joris Delanghe
Journal:  Electrophoresis       Date:  2009-08       Impact factor: 3.535

Review 7.  The effects of variable glycosylation on the functional activities of ribonuclease, plasminogen and tissue plasminogen activator.

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Journal:  Biochim Biophys Acta       Date:  1995-04-05

8.  Mass spectrometric quantification of neutral and sialylated N-glycans from a recombinant therapeutic glycoprotein produced in the two Chinese hamster ovary cell lines.

Authors:  Kyoung-Soon Jang; Yun-Gon Kim; Geun-Cheol Gil; Sang-Ho Park; Byung-Gee Kim
Journal:  Anal Biochem       Date:  2008-12-24       Impact factor: 3.365

9.  Elimination of oxidative degradation during the per-O-methylation of carbohydrates.

Authors:  Ionel Ciucanu; Catherine E Costello
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  26 in total

1.  Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry: Mechanistic Studies and Methods for Improving the Structural Identification of Carbohydrates.

Authors:  Yin-Hung Lai; Yi-Sheng Wang
Journal:  Mass Spectrom (Tokyo)       Date:  2017-09-22

2.  Quantitative Glycomics: A Combined Analytical and Bioinformatics Approach.

Authors:  L Veillon; S Zhou; Y Mechref
Journal:  Methods Enzymol       Date:  2017-01-09       Impact factor: 1.600

3.  LC-MS/MS analysis of permethylated N-glycans facilitating isomeric characterization.

Authors:  Shiyue Zhou; Xue Dong; Lucas Veillon; Yifan Huang; Yehia Mechref
Journal:  Anal Bioanal Chem       Date:  2016-10-28       Impact factor: 4.142

4.  High-Sensitivity Glycan Profiling of Blood-Derived Immunoglobulin G, Plasma, and Extracellular Vesicle Isolates with Capillary Zone Electrophoresis-Mass Spectrometry.

Authors:  Anne-Lise Marie; Somak Ray; Shulin Lu; Jennifer Jones; Ionita Ghiran; Alexander R Ivanov
Journal:  Anal Chem       Date:  2021-01-12       Impact factor: 6.986

Review 5.  Recent Advances in the Mass Spectrometry Methods for Glycomics and Cancer.

Authors:  Muchena J Kailemia; Gege Xu; Maurice Wong; Qiongyu Li; Elisha Goonatilleke; Frank Leon; Carlito B Lebrilla
Journal:  Anal Chem       Date:  2017-10-31       Impact factor: 6.986

6.  Carbon Nanoparticles and Graphene Nanosheets as MALDI Matrices in Glycomics: a New Approach to Improve Glycan Profiling in Biological Samples.

Authors:  Alireza Banazadeh; Wenjing Peng; Lucas Veillon; Yehia Mechref
Journal:  J Am Soc Mass Spectrom       Date:  2018-06-18       Impact factor: 3.109

7.  Quantitation of permethylated N-glycans through multiple-reaction monitoring (MRM) LC-MS/MS.

Authors:  Shiyue Zhou; Yunli Hu; Janie L DeSantos-Garcia; Yehia Mechref
Journal:  J Am Soc Mass Spectrom       Date:  2015-02-20       Impact factor: 3.109

8.  LC-MS/MS isomeric profiling of permethylated N-glycans derived from serum haptoglobin of hepatocellular carcinoma (HCC) and cirrhotic patients.

Authors:  Yifan Huang; Shiyue Zhou; Jianhui Zhu; David M Lubman; Yehia Mechref
Journal:  Electrophoresis       Date:  2017-07-14       Impact factor: 3.535

9.  Building a PGC-LC-MS N-glycan retention library and elution mapping resource.

Authors:  Jodie L Abrahams; Matthew P Campbell; Nicolle H Packer
Journal:  Glycoconj J       Date:  2017-09-13       Impact factor: 2.916

10.  Quantitative LC-MS/MS Glycomic Analysis of Biological Samples Using AminoxyTMT.

Authors:  Shiyue Zhou; Yunli Hu; Lucas Veillon; Sergei I Snovida; John C Rogers; Julian Saba; Yehia Mechref
Journal:  Anal Chem       Date:  2016-07-19       Impact factor: 6.986

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