Literature DB >> 28109441

Quantitative Glycomics: A Combined Analytical and Bioinformatics Approach.

L Veillon1, S Zhou1, Y Mechref2.   

Abstract

Glycosylation is one of the most common and essential protein modifications. pan class="Chemical">Glycans conjugated to biomolecules modulate the function of such molecules through both direct recognition of glycan structures and indirect mechanisms that involve the control of protein turnover rates, stability, and conformation. The biological attributes of glycans in numerous biological processes and implications in a number of diseases highlight the necessity for comprehensive characterization of protein glycosylation. This chapter reviews cutting-edge methods and tools developed to facilitate quantitative glycomics. This chapter highlights the different methods employed for the release and purification of glycans from biological samples. The most effective labeling methods developed for sensitive quantitative glycomics are also described and discussed. The chromatographic approaches that have been used effectively in glycomics are also highlighted.
© 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chromatographic methods; Glycomics; Labeling of glycans; Purification; Release of glycans

Mesh:

Substances:

Year:  2017        PMID: 28109441      PMCID: PMC5708140          DOI: 10.1016/bs.mie.2016.11.006

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  202 in total

1.  Structural analysis of underivatized neutral human milk oligosaccharides in the negative ion mode by nano-electrospray MS(n) (part 1: methodology).

Authors:  Anja Pfenninger; Michael Karas; Berndt Finke; Bernd Stahl
Journal:  J Am Soc Mass Spectrom       Date:  2002-11       Impact factor: 3.109

2.  Structural changes of immunoglobulin G oligosaccharides with age in healthy human serum.

Authors:  E Yamada; Y Tsukamoto; R Sasaki; K Yagyu; N Takahashi
Journal:  Glycoconj J       Date:  1997-04       Impact factor: 2.916

3.  Fragmentation of negative ions from carbohydrates: part 1. Use of nitrate and other anionic adducts for the production of negative ion electrospray spectra from N-linked carbohydrates.

Authors:  David J Harvey
Journal:  J Am Soc Mass Spectrom       Date:  2005-05       Impact factor: 3.109

4.  A chromatographic and mass spectrometric strategy for the analysis of oligosaccharides: determination of the glycan structures in porcine thyroglobulin.

Authors:  J Charlwood; H Birrell; A Organ; P Camilleri
Journal:  Rapid Commun Mass Spectrom       Date:  1999       Impact factor: 2.419

5.  Use of a 2,5-dihydroxybenzoic acid/aniline MALDI matrix for improved detection and on-target Derivatization of glycans: A preliminary report.

Authors:  Sergei I Snovida; Vincent C Chen; Hélène Perreault
Journal:  Anal Chem       Date:  2006-12-15       Impact factor: 6.986

6.  Evolutionary differences in glycosaminoglycan fine structure detected by quantitative glycan reductive isotope labeling.

Authors:  Roger Lawrence; Sara K Olson; Robert E Steele; Lianchun Wang; Rahul Warrior; Richard D Cummings; Jeffrey D Esko
Journal:  J Biol Chem       Date:  2008-09-24       Impact factor: 5.157

7.  Glycan analysis by isobaric aldehyde reactive tags and mass spectrometry.

Authors:  Shuang Yang; Wei Yuan; Weiming Yang; Jianying Zhou; Robert Harlan; James Edwards; Shuwei Li; Hui Zhang
Journal:  Anal Chem       Date:  2013-08-12       Impact factor: 6.986

8.  On the use of DHB/aniline and DHB/N,N-dimethylaniline matrices for improved detection of carbohydrates: automated identification of oligosaccharides and quantitative analysis of sialylated glycans by MALDI-TOF mass spectrometry.

Authors:  Sergei I Snovida; Justin M Rak-Banville; Hélène Perreault
Journal:  J Am Soc Mass Spectrom       Date:  2008-05-03       Impact factor: 3.109

9.  Elimination of oxidative degradation during the per-O-methylation of carbohydrates.

Authors:  Ionel Ciucanu; Catherine E Costello
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

Review 10.  Glycosylation of serum proteins in inflammatory diseases.

Authors:  Olga Gornik; Gordan Lauc
Journal:  Dis Markers       Date:  2008       Impact factor: 3.434

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  4 in total

Review 1.  Characterization of isomeric glycan structures by LC-MS/MS.

Authors:  Lucas Veillon; Yifan Huang; Wenjing Peng; Xue Dong; Byeong Gwan Cho; Yehia Mechref
Journal:  Electrophoresis       Date:  2017-05-17       Impact factor: 3.535

2.  glypy: An Open Source Glycoinformatics Library.

Authors:  Joshua Klein; Joseph Zaia
Journal:  J Proteome Res       Date:  2019-07-30       Impact factor: 4.466

3.  Positive-unlabelled learning of glycosylation sites in the human proteome.

Authors:  Fuyi Li; Yang Zhang; Anthony W Purcell; Geoffrey I Webb; Kuo-Chen Chou; Trevor Lithgow; Chen Li; Jiangning Song
Journal:  BMC Bioinformatics       Date:  2019-03-06       Impact factor: 3.169

Review 4.  Towards a standardized bioinformatics infrastructure for N- and O-glycomics.

Authors:  Miguel A Rojas-Macias; Julien Mariethoz; Peter Andersson; Chunsheng Jin; Vignesh Venkatakrishnan; Nobuyuki P Aoki; Daisuke Shinmachi; Christopher Ashwood; Katarina Madunic; Tao Zhang; Rebecca L Miller; Oliver Horlacher; Weston B Struwe; Yu Watanabe; Shujiro Okuda; Fredrik Levander; Daniel Kolarich; Pauline M Rudd; Manfred Wuhrer; Carsten Kettner; Nicolle H Packer; Kiyoko F Aoki-Kinoshita; Frédérique Lisacek; Niclas G Karlsson
Journal:  Nat Commun       Date:  2019-07-22       Impact factor: 14.919

  4 in total

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