Literature DB >> 23325656

RNAi-mediated gene function analysis in skin.

Slobodan Beronja1, Elaine Fuchs.   

Abstract

We have recently developed a method for RNAi-mediated gene function analysis in skin (Beronja et al., Nat Med 16:821-827, 2010). It employs ultrasound-guided in utero microinjections of lentivirus into the amniotic cavity of embryonic day 9 mice, which result in rapid, efficient, and stable transduction into mouse skin. Our technique greatly extends the available molecular and genetic toolbox for comprehensive functional examination of outstanding problems in epidermal biology. In its simplest form, as a single-gene function analysis via shRNA-mediated gene knockdown, our technique requires no animal mating and may need as little as only a few days between manipulation and phenotypic analysis.

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Year:  2013        PMID: 23325656      PMCID: PMC4160826          DOI: 10.1007/978-1-62703-227-8_23

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Defining the epithelial stem cell niche in skin.

Authors:  Tudorita Tumbar; Geraldine Guasch; Valentina Greco; Cedric Blanpain; William E Lowry; Michael Rendl; Elaine Fuchs
Journal:  Science       Date:  2003-12-11       Impact factor: 47.728

2.  Self-renewal, multipotency, and the existence of two cell populations within an epithelial stem cell niche.

Authors:  Cedric Blanpain; William E Lowry; Andrea Geoghegan; Lisa Polak; Elaine Fuchs
Journal:  Cell       Date:  2004-09-03       Impact factor: 41.582

3.  Efficient in vivo targeting of epidermal stem cells by early gestational intraamniotic injection of lentiviral vector driven by the keratin 5 promoter.

Authors:  Masayuki Endo; Philip W Zoltick; William H Peranteau; Antoneta Radu; Nidal Muvarak; Mayumi Ito; Zaixin Yang; George Cotsarelis; Alan W Flake
Journal:  Mol Ther       Date:  2007-10-09       Impact factor: 11.454

4.  In vivo transduction of mouse epidermis with recombinant retroviral vectors: implications for cutaneous gene therapy.

Authors:  S Ghazizadeh; R Harrington; L Taichman
Journal:  Gene Ther       Date:  1999-07       Impact factor: 5.250

5.  Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures.

Authors:  Feng Zhang; Viviana Gradinaru; Antoine R Adamantidis; Remy Durand; Raag D Airan; Luis de Lecea; Karl Deisseroth
Journal:  Nat Protoc       Date:  2010-02-18       Impact factor: 13.491

6.  A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen.

Authors:  Jason Moffat; Dorre A Grueneberg; Xiaoping Yang; So Young Kim; Angela M Kloepfer; Gregory Hinkle; Bruno Piqani; Thomas M Eisenhaure; Biao Luo; Jennifer K Grenier; Anne E Carpenter; Shi Yin Foo; Sheila A Stewart; Brent R Stockwell; Nir Hacohen; William C Hahn; Eric S Lander; David M Sabatini; David E Root
Journal:  Cell       Date:  2006-03-24       Impact factor: 41.582

7.  Alteration of limb and brain patterning in early mouse embryos by ultrasound-guided injection of Shh-expressing cells.

Authors:  A Liu; A L Joyner; D H Turnbull
Journal:  Mech Dev       Date:  1998-07       Impact factor: 1.882

Review 8.  Epidermal homeostasis: a balancing act of stem cells in the skin.

Authors:  Cédric Blanpain; Elaine Fuchs
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02-11       Impact factor: 94.444

9.  In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector.

Authors:  L Naldini; U Blömer; P Gallay; D Ory; R Mulligan; F H Gage; I M Verma; D Trono
Journal:  Science       Date:  1996-04-12       Impact factor: 47.728

10.  High resolution ultrasound-guided microinjection for interventional studies of early embryonic and placental development in vivo in mice.

Authors:  John C Slevin; Lois Byers; Marina Gertsenstein; Dawei Qu; Junwu Mu; Nana Sunn; John C P Kingdom; Janet Rossant; S Lee Adamson
Journal:  BMC Dev Biol       Date:  2006-02-27       Impact factor: 1.978

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  12 in total

Review 1.  In vivo RNAi screens: concepts and applications.

Authors:  Shane Crotty; Matthew E Pipkin
Journal:  Trends Immunol       Date:  2015-04-27       Impact factor: 16.687

2.  The ciliary GTPase Arl3 maintains tissue architecture by directing planar spindle orientation during epidermal morphogenesis.

Authors:  Samip R Bhattarai; Salma Begum; Rachel Popow; Ellen J Ezratty
Journal:  Development       Date:  2019-05-10       Impact factor: 6.868

3.  Translation from unconventional 5' start sites drives tumour initiation.

Authors:  Ataman Sendoel; Joshua G Dunn; Edwin H Rodriguez; Shruti Naik; Nicholas C Gomez; Brian Hurwitz; John Levorse; Brian D Dill; Daniel Schramek; Henrik Molina; Jonathan S Weissman; Elaine Fuchs
Journal:  Nature       Date:  2017-01-11       Impact factor: 49.962

4.  Correction of aberrant growth preserves tissue homeostasis.

Authors:  Samara Brown; Cristiana M Pineda; Tianchi Xin; Jonathan Boucher; Kathleen C Suozzi; Sangbum Park; Catherine Matte-Martone; David G Gonzalez; Julie Rytlewski; Slobodan Beronja; Valentina Greco
Journal:  Nature       Date:  2017-08-02       Impact factor: 49.962

5.  Embryonic Barcoding of Equipotent Mammary Progenitors Functionally Identifies Breast Cancer Drivers.

Authors:  Zhe Ying; Slobodan Beronja
Journal:  Cell Stem Cell       Date:  2020-02-13       Impact factor: 24.633

6.  THY1-mediated mechanisms converge to drive YAP activation in skin homeostasis and repair.

Authors:  Egor Sedov; Elle Koren; Sucheta Chopra; Roi Ankawa; Yahav Yosefzon; Marianna Yusupova; Lucien E Weiss; Adnan Mahly; Arad Soffer; Alona Feldman; Chen Luxenburg; Yoav Shechtman; Yaron Fuchs
Journal:  Nat Cell Biol       Date:  2022-07-07       Impact factor: 28.213

7.  Epidermal development, growth control, and homeostasis in the face of centrosome amplification.

Authors:  Anita Kulukian; Andrew J Holland; Benjamin Vitre; Shruti Naik; Don W Cleveland; Elaine Fuchs
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

8.  Par3-mInsc and Gαi3 cooperate to promote oriented epidermal cell divisions through LGN.

Authors:  Scott E Williams; Lyndsay A Ratliff; Maria Pia Postiglione; Juergen A Knoblich; Elaine Fuchs
Journal:  Nat Cell Biol       Date:  2014-07-13       Impact factor: 28.824

9.  Selective Translation of Cell Fate Regulators Mediates Tolerance to Broad Oncogenic Stress.

Authors:  Elise Y Cai; Megan N Kufeld; Samantha Schuster; Sonali Arora; Madeline Larkin; Alexandre A Germanos; Andrew C Hsieh; Slobodan Beronja
Journal:  Cell Stem Cell       Date:  2020-06-08       Impact factor: 24.633

10.  RNAi screens in mice identify physiological regulators of oncogenic growth.

Authors:  Slobodan Beronja; Peter Janki; Evan Heller; Wen-Hui Lien; Brice E Keyes; Naoki Oshimori; Elaine Fuchs
Journal:  Nature       Date:  2013-08-14       Impact factor: 49.962

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