Literature DB >> 23322418

Insights into TIM-barrel prenyl transferase mechanisms: crystal structures of PcrB from Bacillus subtilis and Staphylococcus aureus.

Feifei Ren1, Xinxin Feng, Tzu-Ping Ko, Chun-Hsiang Huang, Yumei Hu, Hsiu-Chien Chan, Yi-Liang Liu, Ke Wang, Chun-Chi Chen, Xuefei Pang, Miao He, Yujie Li, Eric Oldfield, Rey-Ting Guo.   

Abstract

Well structured: As a new triose phosphate isomerase (TIM) barrel-fold prenyl transferase, PcrB catalyzes the production of heptaprenylglyceryl phosphate from heptaprenyl diphosphate and glycerol-1-phosphate. Crystal structures of PcrB from Bacillus subtilis and Staphylococcus aureus in complex with ligands were solved, and together with site-directed mutagenesis and bioinformatics analyses, clearly reveal the catalytic mechanism of the enzyme.
Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Mesh：

Substances：

Year:  2013        PMID： 23322418      PMCID： PMC3769695          DOI： 10.1002/cbic.201200748

Source DB:  PubMed          Journal:  Chembiochem        ISSN： 1439-4227            Impact factor:   3.164


  18 in total

1.  Assessment of phase accuracy by cross validation: the free R value. Methods and applications.

Authors:  A T Brünger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1993-01-01

2.  Structural analysis of a set of proteins resulting from a bacterial genomics project.

Authors:  J Badger; J M Sauder; J M Adams; S Antonysamy; K Bain; M G Bergseid; S G Buchanan; M D Buchanan; Y Batiyenko; J A Christopher; S Emtage; A Eroshkina; I Feil; E B Furlong; K S Gajiwala; X Gao; D He; J Hendle; A Huber; K Hoda; P Kearins; C Kissinger; B Laubert; H A Lewis; J Lin; K Loomis; D Lorimer; G Louie; M Maletic; C D Marsh; I Miller; J Molinari; H J Muller-Dieckmann; J M Newman; B W Noland; B Pagarigan; F Park; T S Peat; K W Post; S Radojicic; A Ramos; R Romero; M E Rutter; W E Sanderson; K D Schwinn; J Tresser; J Winhoven; T A Wright; L Wu; J Xu; T J R Harris
Journal:  Proteins       Date:  2005-09-01

3.  The crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase reveals an ancient fold for an ancient enzyme.

Authors:  Jian Payandeh; Masahiro Fujihashi; Wanda Gillon; Emil F Pai
Journal:  J Biol Chem       Date:  2005-12-23       Impact factor: 5.157

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Insight into the activation mechanism of Escherichia coli octaprenyl pyrophosphate synthase derived from pre-steady-state kinetic analysis.

Authors:  Jian-Jung Pan; Tun-Hsun Kuo; Yi-Kai Chen; Lee-Wei Yang; Po-Huang Liang
Journal:  Biochim Biophys Acta       Date:  2002-01-31

Review 6.  Terpene biosynthesis: modularity rules.

Authors:  Eric Oldfield; Fu-Yang Lin
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-21       Impact factor: 15.336

7.  Two distinct mechanisms for TIM barrel prenyltransferases in bacteria.

Authors:  Emma H Doud; Deborah L Perlstein; Manuel Wolpert; David E Cane; Suzanne Walker
Journal:  J Am Chem Soc       Date:  2011-01-07       Impact factor: 15.419

8.  PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication.

Authors:  M A Petit; E Dervyn; M Rose; K D Entian; S McGovern; S D Ehrlich; C Bruand
Journal:  Mol Microbiol       Date:  1998-07       Impact factor: 3.501

9.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Complete characterization of the seventeen step moenomycin biosynthetic pathway.

Authors:  Bohdan Ostash; Emma H Doud; Cecilie Lin; Iryna Ostash; Deborah L Perlstein; Shinichiro Fuse; Manuel Wolpert; Daniel Kahne; Suzanne Walker
Journal:  Biochemistry       Date:  2009-09-22       Impact factor: 3.162
View more
  7 in total

Review 1.  The catalytic and structural basis of archaeal glycerophospholipid biosynthesis.

Authors:  Niels A W de Kok; Arnold J M Driessen
Journal:  Extremophiles       Date:  2022-08-17       Impact factor: 3.035

Review 2.  A re-evaluation of the archaeal membrane lipid biosynthetic pathway.

Authors:  Laura Villanueva; Jaap S Sinninghe Damsté; Stefan Schouten
Journal:  Nat Rev Microbiol       Date:  2014-05-07       Impact factor: 60.633

3.  Identification and Characterization of Heptaprenylglyceryl Phosphate Processing Enzymes in Bacillus subtilis.

Authors:  Mona Linde; David Peterhoff; Reinhard Sterner; Patrick Babinger
Journal:  J Biol Chem       Date:  2016-05-14       Impact factor: 5.157

Review 4.  Biosynthesis of archaeal membrane ether lipids.

Authors:  Samta Jain; Antonella Caforio; Arnold J M Driessen
Journal:  Front Microbiol       Date:  2014-11-26       Impact factor: 5.640

5.  Construction of an artificial biosynthetic pathway for hyperextended archaeal membrane lipids in the bacterium Escherichia coli.

Authors:  Ryo Yoshida; Hisashi Hemmi
Journal:  Synth Biol (Oxf)       Date:  2020-09-30

6.  Hexamerization and thermostability emerged very early during geranylgeranylglyceryl phosphate synthase evolution.

Authors:  Cosimo Kropp; Kristina Straub; Mona Linde; Patrick Babinger
Journal:  Protein Sci       Date:  2021-01-11       Impact factor: 6.725

7.  Constitutive Activation of the Nlrc4 Inflammasome Prevents Hepatic Fibrosis and Promotes Hepatic Regeneration after Partial Hepatectomy.

Authors:  David A DeSantis; Chih-Wei Ko; Lan Wang; Peter Lee; Colleen M Croniger
Journal:  Mediators Inflamm       Date:  2015-11-09       Impact factor: 4.711
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.