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Literature DB >> 23315327

Phylogenetic relatedness of HIV-1 donor and recipient populations.

Joel O Wertheim, Konrad Scheffler, Jun Yong Choi, Davey M Smith, Sergei L Kosakovsky Pond.

Abstract

Entities: Species

Mesh：

Year: 2013 PMID： 23315327 PMCID： PMC3583277 DOI： 10.1093/infdis/jit021

Source DB: PubMed Journal: J Infect Dis ISSN： 0022-1899 Impact factor: 5.226

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8 in total

1. Testing for equality of evolutionary rates.

Authors: S V Muse; B S Weir
Journal: Genetics Date: 1992-09 Impact factor: 4.562

2. Evolution. The tree-thinking challenge.

Authors: David A Baum; Stacey Dewitt Smith; Samuel S S Donovan
Journal: Science Date: 2005-11-11 Impact factor: 47.728

3. Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.

Authors: Joshua T Herbeck; David C Nickle; Gerald H Learn; Geoffrey S Gottlieb; Marcel E Curlin; Laura Heath; James I Mullins
Journal: J Virol Date: 2006-02 Impact factor: 5.103

4. Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions.

Authors: Andrew D Redd; Aleisha N Collinson-Streng; Nikolaos Chatziandreou; Caroline E Mullis; Oliver Laeyendecker; Craig Martens; Stacy Ricklefs; Noah Kiwanuka; Phyu Hninn Nyein; Tom Lutalo; Mary K Grabowski; Xiangrong Kong; Jordyn Manucci; Nelson Sewankambo; Maria J Wawer; Ronald H Gray; Stephen F Porcella; Anthony S Fauci; Manish Sagar; David Serwadda; Thomas C Quinn
Journal: J Infect Dis Date: 2012-09-19 Impact factor: 5.226

5. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Authors: K Tamura; M Nei
Journal: Mol Biol Evol Date: 1993-05 Impact factor: 16.240

6. Man's place in Hominoidea revealed by mitochondrial DNA genealogy.

Authors: S Horai; Y Satta; K Hayasaka; R Kondo; T Inoue; T Ishida; S Hayashi; N Takahata
Journal: J Mol Evol Date: 1992-07 Impact factor: 2.395

7. Bayesian phylogenetics with BEAUti and the BEAST 1.7.

Authors: Alexei J Drummond; Marc A Suchard; Dong Xie; Andrew Rambaut
Journal: Mol Biol Evol Date: 2012-02-25 Impact factor: 16.240

8. New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels.

Authors: Katrina A Lythgoe; Christophe Fraser
Journal: Proc Biol Sci Date: 2012-05-16 Impact factor: 5.349

8 in total

5 in total

Phylogenetic relatedness of HIV-1 donor and recipient populations.

1. Testing for equality of evolutionary rates.

2. Evolution. The tree-thinking challenge.

3. Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.

4. Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions.

5. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

6. Man's place in Hominoidea revealed by mitochondrial DNA genealogy.

7. Bayesian phylogenetics with BEAUti and the BEAST 1.7.

8. New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels.

1. Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering.

2. Impact of sampling density on the extent of HIV clustering.

3. Molecular Features of the V1-V4 Coding Region of Sexually Transmitted Human Immunodeficiency Virus Type 1.

4. The global transmission network of HIV-1.

5. Viral Genetic Linkage Analysis in the Presence of Missing Data.