| Literature DB >> 23308101 |
Isabelle Perrault1, Alejandro Estrada-Cuzcano, Irma Lopez, Susanne Kohl, Shiqiang Li, Francesco Testa, Renate Zekveld-Vroon, Xia Wang, Esther Pomares, Jean Andorf, Nisrine Aboussair, Sandro Banfi, Nathalie Delphin, Anneke I den Hollander, Catherine Edelson, Ralph Florijn, Marc Jean-Pierre, Corinne Leowski, Andre Megarbane, Cristina Villanueva, Blanca Flores, Arnold Munnich, Huanan Ren, Ditta Zobor, Arthur Bergen, Rui Chen, Frans P M Cremers, Roser Gonzalez-Duarte, Robert K Koenekoop, Francesca Simonelli, Edwin Stone, Bernd Wissinger, Qingjiong Zhang, Josseline Kaplan, Jean-Michel Rozet.
Abstract
Leber congenital amaurosis (LCA) is the earliest and most severe retinal degeneration (RD), and the most common cause of incurable blindness diagnosed in children. It is occasionally the presenting symptom of multisystemic ciliopathies which diagnosis will require a specific care of patients. Nineteen LCA genes are currently identified and three of them account for both non-syndromic and syndromic forms of the disease. RD3 (LCA12) was implicated as a LCA gene based on the identification of homozygous truncating mutations in two LCA families despite the screening of large cohorts of patients. Here we provide a comprehensive survey of RD3 mutations and of their clinical expression through the screening of a cohort of 852 patients originating worldwide affected with LCA or early-onset and severe RD. We identified three RD3 mutations in seven unrelated consanguineous LCA families - i.e., a 2 bp deletion and two nonsense mutations - predicted to cause complete loss of function. Five families originating from the Southern Shores of the Mediterranean segregated a similar mutation (c.112C>T, p.R38*) suggesting that this change may have resulted from an ancient founder effect. Considering the low frequency of RD3 carriers, the recurrence risk for LCA in non-consanguineous unions is negligible for both heterozygote and homozygote RD3 individuals. The LCA12 phenotype in our patients is highly similar to those of patients with mutant photoreceptor-specific guanylate cyclase (GUCY2D/LCA1). This observation is consistent with the report of the role of RD3 in trafficking of GUCYs and gives further support to a common mechanism of photoreceptor degeneration in LCA12 and LCA1, i.e., inability to increase cytoplasmic cGMP concentration in outer segments and thus to recover the dark-state. Similar to LCA1, LCA12 patients have no extraocular symptoms despite complete inactivation of both RD3 alleles, supporting the view that extraocular investigations in LCA infants with RD3 mutations should be avoided.Entities:
Mesh:
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Year: 2013 PMID: 23308101 PMCID: PMC3538699 DOI: 10.1371/journal.pone.0051622
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Cohorts of patients affected with various retinal dystrophies screened for RD3 mutations.
| Origin | Number patients | Ethnicity | Screening methodology | |
|
| Central America | 10 | Mexican | 1 |
| North America | 513 | Unspecified mixed | 1,2 | |
| China | 78 | Han Chinese | 1 | |
| Europe | ||||
| France | 190 | Mixed population | 1 | |
| Germany | 1 | Turkish origin | ||
| Italy | 90 | Italian | 1 | |
| Spain | 5 | Spanish | 1 | |
|
| Europe (The Netherlands) | 96 | Mostly Dutch patients | 1 |
|
| Europe (Italy) | 150 | Italian | 1 |
| China | 11+21 | Han Chinese | 1 |
Retinal dystrophies including cone/cone-rod dystrophies and unclassified RDs;
Patients with blindness or severe visual deficiency but ERG data unavailable.1 Direct sequencing and 2 SCCP screening of the two coding exons and intron-exon boundaries.
RD3 mutations and related retinal phenotype.
| Position | Mutation type | Mutation | Predicted effect on protein | Family/Patient& gender/age (age at examination if different) | Country of origin | Light behavior | Refraction | Visual acuity | Fundus Aspect | Remarks |
|
| Nonsense | c.112C>T | p.R38* | NEM1/II1F/2.5 | Morocco | Photoaversion | −1.50 LE;−1.50 RE (measured without cycloplegic) | NA | Macular rearrangement, With abnormal macular pigmentation with starshape Diffuse salt and pepper aspect, thin vessels | Nystagmus since birth, no ocular pursuit, altered pupillary reflexes |
| NEM2/II1F/31 | Morocco | Photoaversion | NA | LP LRE | NA | Nystagmus since birth altered pupillary reflexes, Keratoconus | ||||
| NEM2/II2F/27 | Photoaversion | NA | LP LRE | NA | Nystagmus since birth, altered pupillary reflexes | |||||
| NEM3/II2F/12 | Lebanon | Photoaversion | +2 RE;+2.75 LE | LP LE; HM RE | Salt and pepper retina, thin vessels, marked macular atrophy | Nystagmus at birth, DOSF | ||||
| NEM3/II3F/9(8) | NA | +1 LRE | CF RE;HM LE | NA | ||||||
| NEM3/II4M/2(1) | NA | NA | HM LRE | NA | ||||||
| NEM4/II1F/22(4) | Turkey | Photoaversion | +4 LRE | LP LRE | Macular rearrangement, thin retinal vessels, dull retina with no pigmentary migrations | |||||
| NEM4/II2F/10(3) | Turkey | Photoaversion | +3 LRE | LP LRE | Macular rearrangement, thin retinal vessels, dull retina with no pigmentary migrations | |||||
| F16338/LCA59-2-94F/17 | Turkey | Photoaversion | NA | LP LRE | Macular atrophy, RPE atrophy with salt and pepper aspect, some bone-spicule pigment in the mid periphery | Nystagmus since birth, altered papillary reflexes | ||||
|
| Deletion | c.137–138delAG | p.E46Afs83* | NEM5/II1F/21(4) | Algeria | Photoaversion | +4 LRE | LP LRE | Macular rearrangement (4 yrs), thin retinal vessels, dull retina with no pigmentary migrations | Nystagmus since birth, no ocular pursuit, altered pupillary reflexes |
|
| Nonsense | c.136G>T | p.E46* | FJC/F/4(3) | Mexico | No photoaversion, No nyctalopia | +1.25 LRE | HM LRE | Macular atrophy, attenuated retinal vessels, abnormal RPE in the mid-periphery, optic disk pallor | Nystagmus since birth, DOSF |
LE: left eye; RE: right eye; LP: light perception; HM: hand movements; CF: counting fingers; DOSF: digito-ocular signs of Franceschetti; NA: not available.
Figure 1Pedigree structure of the 4/5 families segregating the c.112C>T mutation of the RD3 gene with haplotypes reconstruction for informative markers on chromosome 1q32.2-q41.
Black circles (women) and squares (men) indicate affected members. Chromosomal positions of SNP and microsatellite markers are indicated in Mega base pairs (Mb) according to the UCSC Genome Browser GRCh37/hg19 assembly. Common haplotypes in families NEM1, NEM2 and in families NEM1, NEM2, NEM3 are shared with dotted and solid lines, respectively. NA not available.
RD3 Changes of uncertain pathogenicity.
| Position | Mutation type | Mutation | Predicted effect on protein | Conservation of the mutant aa | Predicted effect (SIFT, Polyphen-2, AlignGCVD) | Remarks |
| Exon 2 | Missense | c.146A>T | p.N49I | Low | Deleterious | 1/200 patient (European descent, single heterozygosity) |
RD3 Coding SNPs.
| Position | Polymorphism type | Change | Predicted effect on protein | Rs numnber | Reference |
| Exon 2 | Non-conservative | c.16T>C | p.W6R | rs35649846 | dbSNP |
| Exon 2 | Non-conservative | c.69G>C | p.E23D | rs34422496 | dbSNP |
| Exon 2 | Non-conservative | c.83C>T | p.T28M | rs61740157 | dbSNP |
| Exon 2 | Conservative | c.84G>A | p.T28T | rs61740158 | dbSNP |
| Exon 2 | Non-conservative | c.101C>T | p.T34M | - | This study |
| Exon 2 | Non-conservative | c.103G>A | p.G35R | rs34049451 | dbSNP |
| Exon 2 | Non-conservative | c.139C>T | p.R47C | rs34049451 | dbSNP |
| Exon 2 | Non-conservative | c.202C>T | p.R68W | - | Friedman et al. 2006 |
| Exon 2 | Conservative | c.235T>C | p.L79L | rs35937732 | dbSNP |
| Exon 3 | Conservative | c.498C>T | p.I166I | - | This study |
| Exon 3 | Non-conservative | c.500G>A | p.R167K | rs74782684 | dbSNP |
| Exon 3 | Non-conservative | c.511G>A | p.E171K | - | This study |
| Exon 3 | Non-conservative | c.584A>T | p.D195V | - | Friedman et al. 2006; This study |
Novel non-conservative changes were regarded as polymorphisms when they did not segregate with the disease in patients and/or were found in control individuals. References: 1:http://www.ncbi.nlm.nih.gov/SNP/; 2: Friedman et al. 2006. All Sequence change data are based on the RefSeq cDNA sequence NM_183059.2.
Figure 2Fundus photographs of the affected person FJC/F ( ).
The proband has poor vision since birth with nystagmus and atrophic lesions in the macular area.