Literature DB >> 23304418

Comparing predictive models of glioblastoma multiforme built using multi-institutional and local data sources.

Kyle W Singleton1, William Hsu, Alex A T Bui.   

Abstract

The growing amount of electronic data collected from patient care and clinical trials is motivating the creation of national repositories where multiple institutions share data about their patient cohorts. Such efforts aim to provide sufficient sample sizes for data mining and predictive modeling, ultimately improving treatment recommendations and patient outcome prediction. While these repositories offer the potential to improve our understanding of a disease, potential issues need to be addressed to ensure that multi-site data and resultant predictive models are useful to non-contributing institutions. In this paper we examine the challenges of utilizing National Cancer Institute datasets for modeling glioblastoma multiforme. We created several types of prognostic models and compared their results against models generated using data solely from our institution. While overall model performance between the data sources was similar, different variables were selected during model generation, suggesting that mapping data resources between models is not a straightforward issue.

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Year:  2012        PMID: 23304418      PMCID: PMC3540487     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  11 in total

1.  Practical experiences on the necessity of external validation.

Authors:  I R König; J D Malley; C Weimar; H-C Diener; A Ziegler
Journal:  Stat Med       Date:  2007-12-30       Impact factor: 2.373

2.  Magnetic resonance imaging characteristics predict epidermal growth factor receptor amplification status in glioblastoma.

Authors:  Manish Aghi; Paola Gaviani; John W Henson; Tracy T Batchelor; David N Louis; Fred G Barker
Journal:  Clin Cancer Res       Date:  2005-12-15       Impact factor: 12.531

Review 3.  Estimating causal effects from large data sets using propensity scores.

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4.  MR imaging correlates of survival in patients with high-grade gliomas.

Authors:  Whitney B Pope; James Sayre; Alla Perlina; J Pablo Villablanca; Paul S Mischel; Timothy F Cloughesy
Journal:  AJNR Am J Neuroradiol       Date:  2005 Nov-Dec       Impact factor: 3.825

5.  A multivariate analysis of 416 patients with glioblastoma multiforme: prognosis, extent of resection, and survival.

Authors:  M Lacroix; D Abi-Said; D R Fourney; Z L Gokaslan; W Shi; F DeMonte; F F Lang; I E McCutcheon; S J Hassenbusch; E Holland; K Hess; C Michael; D Miller; R Sawaya
Journal:  J Neurosurg       Date:  2001-08       Impact factor: 5.115

6.  Rembrandt: helping personalized medicine become a reality through integrative translational research.

Authors:  Subha Madhavan; Jean-Claude Zenklusen; Yuri Kotliarov; Himanso Sahni; Howard A Fine; Kenneth Buetow
Journal:  Mol Cancer Res       Date:  2009-02-10       Impact factor: 5.852

7.  External validation is necessary in prediction research: a clinical example.

Authors:  S E Bleeker; H A Moll; E W Steyerberg; A R T Donders; G Derksen-Lubsen; D E Grobbee; K G M Moons
Journal:  J Clin Epidemiol       Date:  2003-09       Impact factor: 6.437

8.  A proposed classification system that projects outcomes based on preoperative variables for adult patients with glioblastoma multiforme.

Authors:  Kaisorn Chaichana; Scott Parker; Alessandro Olivi; Alfredo Quiñones-Hinojosa
Journal:  J Neurosurg       Date:  2010-05       Impact factor: 5.115

9.  Radiogenomic mapping of edema/cellular invasion MRI-phenotypes in glioblastoma multiforme.

Authors:  Pascal O Zinn; Bhanu Mahajan; Bhanu Majadan; Pratheesh Sathyan; Sanjay K Singh; Sadhan Majumder; Ferenc A Jolesz; Rivka R Colen
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

10.  Integrated morphologic analysis for the identification and characterization of disease subtypes.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; Fusheng Wang; Jingjing Gao; Christina Appin; Sharath Cholleti; Tony Pan; Ashish Sharma; Lisa Scarpace; Tom Mikkelsen; Tahsin Kurc; Carlos S Moreno; Daniel J Brat; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2012-01-24       Impact factor: 4.497

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  4 in total

1.  Motivating the additional use of external validity: examining transportability in a model of glioblastoma multiforme.

Authors:  Kyle W Singleton; William Speier; Alex A T Bui; William Hsu
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

Review 2.  A review of approaches to identifying patient phenotype cohorts using electronic health records.

Authors:  Chaitanya Shivade; Preethi Raghavan; Eric Fosler-Lussier; Peter J Embi; Noemie Elhadad; Stephen B Johnson; Albert M Lai
Journal:  J Am Med Inform Assoc       Date:  2013-11-07       Impact factor: 4.497

3.  High throughput tools to access images from clinical archives for research.

Authors:  Shawn N Murphy; Christopher Herrick; Yanbing Wang; Taowei David Wang; Darren Sack; Katherine P Andriole; Jesse Wei; Nathaniel Reynolds; Wendy Plesniak; Bruce R Rosen; Steven Pieper; Randy L Gollub
Journal:  J Digit Imaging       Date:  2015-04       Impact factor: 4.056

4.  A Roadmap for Optimizing Asthma Care Management via Computational Approaches.

Authors:  Gang Luo; Katherine Sward
Journal:  JMIR Med Inform       Date:  2017-09-26
  4 in total

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