Literature DB >> 17907249

Practical experiences on the necessity of external validation.

I R König1, J D Malley, C Weimar, H-C Diener, A Ziegler.   

Abstract

The validity of prognostic models is an important prerequisite for their applicability in practical clinical settings. Here, we report on a specific prognostic study on stroke patients and describe how we explored the prediction performance of our model. We considered two practically highly relevant generalization aspects, namely, the model's performance in patients recruited at a later time point (temporal transportability) and in medical centers different from those used for model building (geographic transportability). To estimate the accuracy of the model, we investigated classical internal validation techniques and leave-one-center-out cross validation (CV). Prognostic models predicting functional independence of stroke patients were developed in a training set using logistic regression, support vector machines, and random forests (RFs). Tenfold CV and leave-one-center-out CV were employed to estimate temporal and geographic transportability of the models. For temporal and external validation, the resulting models were used to classify patients from a later time point and from different clinics. When applying the regression model or the RFs, accuracy in the temporal validation data was well predicted from classical internal validation. However, when predicting geographic transportability all approaches had difficulties. We observed that the leave-one-center-out CV yielded better estimates than classical CV. On the basis of our results, we conclude that external validation in patients from different clinics is required before a prognostic model can be applied in practice. Even validating the model in patients recruited merely at a later time point does not suffice to predict how it may fare with regard to another clinic. Copyright (c) 2007 John Wiley & Sons, Ltd.

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Year:  2007        PMID: 17907249     DOI: 10.1002/sim.3069

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  37 in total

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3.  Patient-centered yes/no prognosis using learning machines.

Authors:  I R König; J D Malley; S Pajevic; C Weimar; H-C Diener; A Ziegler
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Review 4.  Molecular signatures of cardiovascular disease risk: potential for test development and clinical application.

Authors:  Heribert Schunkert; Inke R König; Jeanette Erdmann
Journal:  Mol Diagn Ther       Date:  2008       Impact factor: 4.074

5.  Motivating the additional use of external validity: examining transportability in a model of glioblastoma multiforme.

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Review 6.  Statistical learning approaches in the genetic epidemiology of complex diseases.

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7.  Evaluating diagnostic accuracy of genetic profiles in affected offspring families.

Authors:  Jerome Carayol; Frédéric Tores; Inke R König; Jörg Hager; Andreas Ziegler
Journal:  Stat Med       Date:  2010-09-30       Impact factor: 2.373

8.  Evidence-Based Assessment from Simple Clinical Judgments to Statistical Learning: Evaluating a Range of Options Using Pediatric Bipolar Disorder as a Diagnostic Challenge.

Authors:  Eric A Youngstrom; Tate F Halverson; Jennifer K Youngstrom; Oliver Lindhiem; Robert L Findling
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9.  Prediction of In-Hospital Pressure Ulcer Development.

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10.  An introduction to recursive partitioning: rationale, application, and characteristics of classification and regression trees, bagging, and random forests.

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Journal:  Psychol Methods       Date:  2009-12
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