Literature DB >> 23301203

Exploring residues crucial for nitrilase function by site directed mutagenesis to gain better insight into sequence-function relationships.

Shubhangi Kaushik1, Utpal Mohan, Uc Banerjee.   

Abstract

Nitrilases represent a very important class of enzymes having an array of applications. In the present scenario, where the indepth information about nitrilases is limited, the present work is an attempt to shed light on the residues crucial for the nitrilase activity. The nitrilase sequences demonstrating varying degree of identity with P. putida nitrilase were explored. A stretch of residues, fairly conserved throughout the range of higher (96%) to lower (27%) sequence identity among different nitrilases was selected and investigated for the possible functional role in nitrilase enzyme system. Subsequently, the alanine substitution mutants (T48A, W49A, L50A, P51A, G52A, Y53A and P54A) were generated. Substitution of the rationally selected conserved residues altered the substrate recognition ability, catalysis and affected the substrate specificity but had very little impact on enantioselectivity and pattern of nitrile hydrolysis.

Entities:  

Keywords:  Nitrilase; catalysis; conserved residues; mutants; sequence identity; site directed mutagenesis

Year:  2012        PMID: 23301203      PMCID: PMC3533885     

Source DB:  PubMed          Journal:  Int J Biochem Mol Biol        ISSN: 2152-4114


  20 in total

Review 1.  The nitrile-degrading enzymes: current status and future prospects.

Authors:  A Banerjee; R Sharma; U C Banerjee
Journal:  Appl Microbiol Biotechnol       Date:  2002-09-06       Impact factor: 4.813

Review 2.  The nitrilase family of CN hydrolysing enzymes - a comparative study.

Authors:  C O'Reilly; P D Turner
Journal:  J Appl Microbiol       Date:  2003       Impact factor: 3.772

3.  Cross-linked enzyme aggregates of recombinant Pseudomonas putida nitrilase for enantioselective nitrile hydrolysis.

Authors:  Sandeep Kumar; Utpal Mohan; Ashwini L Kamble; Sandip Pawar; Uttam C Banerjee
Journal:  Bioresour Technol       Date:  2010-04-10       Impact factor: 9.642

4.  Purification and characterization of an enantioselective arylacetonitrilase from Pseudomonas putida.

Authors:  Anirban Banerjee; Praveen Kaul; U C Banerjee
Journal:  Arch Microbiol       Date:  2005-12-09       Impact factor: 2.552

Review 5.  Enzyme promiscuity: mechanism and applications.

Authors:  Karl Hult; Per Berglund
Journal:  Trends Biotechnol       Date:  2007-03-26       Impact factor: 19.536

6.  Structure of amidase from Pseudomonas aeruginosa showing a trapped acyl transfer reaction intermediate state.

Authors:  Jorge Andrade; Amin Karmali; Maria A Carrondo; Carlos Frazão
Journal:  J Biol Chem       Date:  2007-04-17       Impact factor: 5.157

7.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

8.  Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.

Authors:  T Nakai; T Hasegawa; E Yamashita; M Yamamoto; T Kumasaka; T Ueki; H Nanba; Y Ikenaka; S Takahashi; M Sato; T Tsukihara
Journal:  Structure       Date:  2000-07-15       Impact factor: 5.006

9.  Nitrilase in biosynthesis of the plant hormone indole-3-acetic acid from indole-3-acetonitrile: cloning of the Alcaligenes gene and site-directed mutagenesis of cysteine residues.

Authors:  M Kobayashi; H Izui; T Nagasawa; H Yamada
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-01       Impact factor: 11.205

Review 10.  The nitrilase superfamily: classification, structure and function.

Authors:  H C Pace; C Brenner
Journal:  Genome Biol       Date:  2001-01-15       Impact factor: 13.583

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  2 in total

1.  Classifying nitrilases as aliphatic and aromatic using machine learning technique.

Authors:  Nikhil Sharma; Ruchi Verma; Tek Chand Bhalla
Journal:  3 Biotech       Date:  2018-01-12       Impact factor: 2.406

2.  Substrate specificity of plant nitrilase complexes is affected by their helical twist.

Authors:  Jeremy D Woodward; Inga Trompetter; B Trevor Sewell; Markus Piotrowski
Journal:  Commun Biol       Date:  2018-11-02
  2 in total

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