Literature DB >> 23297715

Iterative thresholding algorithm for multiexponential decay applied to PGSE NMR data.

Mateusz Urbańczyk1, Diana Bernin, Wiktor Koźmiński, Krzysztof Kazimierczuk.   

Abstract

Pulsed gradient spin echo (PGSE) is a well-known NMR technique for determining diffusion coefficients. Various signal processing techniques have been introduced to solve the task, which is especially challenging when the decay is multiexponential with an unknown number of components. Here, we introduce a new method for the processing of such types of signals. Our approach modifies the Tikhonov's regularization, known previously in CONTIN and Maximum Entropy (MaxEnt) methods, by using the l(1)-norm penalty function. The modification enforces sparsity of the result, which improves resolution, compared to both mentioned methods. We implemented the Iterative Thresholding Algorithm for Multiexponential Decay (ITAMeD), which employs the l(1)-norm minimization, using the Fast Iterative Shrinkage Thresholding Algorithm (FISTA). The proposed method is compared with the Levenberg-Marquardt-Fletcher fitting, Non-negative Least Squares (NNLS), CONTIN, and MaxEnt methods on simulated datasets, with regard to noise vulnerability and resolution. Also, the comparison with MaxEnt is presented for the experimental data of polyethylene glycol (PEG) polymer solutions and mixtures of these with various molecular weights (1080 g/mol, 11,840 g/mol, 124,700 g/mol). The results suggest that ITAMeD may be the method of choice for monodispersed samples with "discrete" distributions of diffusion coefficients.

Entities:  

Year:  2013        PMID: 23297715     DOI: 10.1021/ac3032004

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  9 in total

1.  Insight into human insulin aggregation revisited using NMR derived translational diffusion parameters.

Authors:  Jerzy Sitkowski; Wojciech Bocian; Elżbieta Bednarek; Mateusz Urbańczyk; Wiktor Koźmiński; Piotr Borowicz; Grażyna Płucienniczak; Natalia Łukasiewicz; Iwona Sokołowska; Lech Kozerski
Journal:  J Biomol NMR       Date:  2018-06-12       Impact factor: 2.835

2.  Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions.

Authors:  Vojtěch Zapletal; Arnošt Mládek; Kateřina Melková; Petr Louša; Erik Nomilner; Zuzana Jaseňáková; Vojtěch Kubáň; Markéta Makovická; Alice Laníková; Lukáš Žídek; Jozef Hritz
Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

3.  Solving 2D Fredholm Integral from Incomplete Measurements Using Compressive Sensing.

Authors:  Alexander Cloninger; Wojciech Czaja; Ruiliang Bai; Peter J Basser
Journal:  SIAM J Imaging Sci       Date:  2014-09-17       Impact factor: 2.867

4.  Accelerating Restricted Diffusion NMR Studies with Time-Resolved and Ultrafast Methods.

Authors:  Mateusz Urbańczyk; Yashu Kharbanda; Otto Mankinen; Ville-Veikko Telkki
Journal:  Anal Chem       Date:  2020-07-02       Impact factor: 6.986

5.  Comprehensive NMR Analysis of Pore Structures in Superabsorbing Cellulose Nanofiber Aerogels.

Authors:  Yashu Kharbanda; Mateusz Urbańczyk; Ossi Laitinen; Kirsten Kling; Sakari Pallaspuro; Sanna Komulainen; Henrikki Liimatainen; Ville-Veikko Telkki
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2019-12-02       Impact factor: 4.126

6.  Deeper Insight into Photopolymerization: The Synergy of Time-Resolved Nonuniform Sampling and Diffusion NMR.

Authors:  Kristina Kristinaityte; Adam Mames; Mariusz Pietrzak; Franz F Westermair; Wagner Silva; Ruth M Gschwind; Tomasz Ratajczyk; Mateusz Urbańczyk
Journal:  J Am Chem Soc       Date:  2022-07-19       Impact factor: 16.383

7.  The GNAT: A new tool for processing NMR data.

Authors:  Laura Castañar; Guilherme Dal Poggetto; Adam A Colbourne; Gareth A Morris; Mathias Nilsson
Journal:  Magn Reson Chem       Date:  2018-03-25       Impact factor: 2.447

8.  Tracking oxidation-induced alterations in fibrin clot formation by NMR-based methods.

Authors:  Wai-Hoe Lau; Nathan J White; Tsin-Wen Yeo; Russell L Gruen; Konstantin Pervushin
Journal:  Sci Rep       Date:  2021-08-03       Impact factor: 4.379

9.  Computing and visualising intra-voxel orientation-specific relaxation-diffusion features in the human brain.

Authors:  João P de Almeida Martins; Chantal M W Tax; Alexis Reymbaut; Filip Szczepankiewicz; Maxime Chamberland; Derek K Jones; Daniel Topgaard
Journal:  Hum Brain Mapp       Date:  2020-10-06       Impact factor: 5.399

  9 in total

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