Literature DB >> 23296537

Software tools for glycan profiling.

Chuan-Yih Yu1, Anoop Mayampurath, Haixu Tang.   

Abstract

We introduce three software tools, Cartoonist, GlycoWorkbench, and MultiGlycan, for N-glycan profiling of complex biological samples. Detailed instructions for using these tools are provided, and their performances are demonstrated by using real glycan profiling data.

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Year:  2013        PMID： 23296537      PMCID： PMC3861397          DOI： 10.1007/978-1-62703-146-2_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  12 in total

1.  'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns.

Authors:  T Hastie; R Tibshirani; M B Eisen; A Alizadeh; R Levy; L Staudt; W C Chan; D Botstein; P Brown
Journal:  Genome Biol       Date:  2000-08-04       Impact factor: 13.583

Review 2.  N-glycosylation of serum proteins in disease and its investigation using lectins.

Authors:  G A Turner
Journal:  Clin Chim Acta       Date:  1992-06-30       Impact factor: 3.786

3.  A mathematical model of N-linked glycosylation.

Authors:  Frederick J Krambeck; Michael J Betenbaugh
Journal:  Biotechnol Bioeng       Date:  2005-12-20       Impact factor: 4.530

Review 4.  GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research.

Authors:  Thomas Lütteke; Andreas Bohne-Lang; Alexander Loss; Thomas Goetz; Martin Frank; Claus-W von der Lieth
Journal:  Glycobiology       Date:  2005-10-20       Impact factor: 4.313

Review 5.  Advancing glycomics: implementation strategies at the consortium for functional glycomics.

Authors:  Rahul Raman; Maha Venkataraman; Subu Ramakrishnan; Wei Lang; S Raguram; Ram Sasisekharan
Journal:  Glycobiology       Date:  2006-02-14       Impact factor: 4.313

Review 6.  Protein glycosylation in disease: new insights into the congenital muscular dystrophies.

Authors:  Enca Martin-Rendon; Derek J Blake
Journal:  Trends Pharmacol Sci       Date:  2003-04       Impact factor: 14.819

Review 7.  Terminal glycosylation and disease: influence on cancer and cystic fibrosis.

Authors:  T F Scanlin; M C Glick
Journal:  Glycoconj J       Date:  2000 Jul-Sep       Impact factor: 2.916

8.  Alterations in the serum glycome due to metastatic prostate cancer.

Authors:  Zuzana Kyselova; Yehia Mechref; Mohammad M Al Bataineh; Lacey E Dobrolecki; Robert J Hickey; Jake Vinson; Christopher J Sweeney; Milos V Novotny
Journal:  J Proteome Res       Date:  2007-04-14       Impact factor: 4.466

9.  Identification of N-glycan serum markers associated with hepatocellular carcinoma from mass spectrometry data.

Authors:  Zhiqun Tang; Rency S Varghese; Slavka Bekesova; Christopher A Loffredo; Mohamed Abdul Hamid; Zuzana Kyselova; Yehia Mechref; Milos V Novotny; Radoslav Goldman; Habtom W Ressom
Journal:  J Proteome Res       Date:  2010-01       Impact factor: 4.466

10.  The Complex Carbohydrate Structure Database.

Authors:  S Doubet; K Bock; D Smith; A Darvill; P Albersheim
Journal:  Trends Biochem Sci       Date:  1989-12       Impact factor: 13.807
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