Literature DB >> 16478800

Advancing glycomics: implementation strategies at the consortium for functional glycomics.

Rahul Raman1, Maha Venkataraman, Subu Ramakrishnan, Wei Lang, S Raguram, Ram Sasisekharan.   

Abstract

Glycomics-an integrated approach to study structure-function relationships of complex carbohydrates (or glycans)-is an emerging field in this age of post-genomics. Realizing the importance of glycomics, many large scale research initiatives have been established to generate novel resources and technologies to advance glycomics. These initiatives are generating and cataloging diverse data sets necessitating the development of bioinformatic platforms to acquire, integrate, and disseminate these data sets in a meaningful fashion. With the consortium for functional glycomics (CFG) as the model system, this review discusses databases and the bioinformatics platform developed by this consortium to advance glycomics.

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Year:  2006        PMID: 16478800     DOI: 10.1093/glycob/cwj080

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  67 in total

Review 1.  Proteoglycomics: recent progress and future challenges.

Authors:  Mellisa Ly; Tatiana N Laremore; Robert J Linhardt
Journal:  OMICS       Date:  2010-08

Review 2.  Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data.

Authors:  Gang Liu; Sriram Neelamegham
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2015-04-13

3.  Peptide- and saccharide-conjugated dendrimers for targeted drug delivery: a concise review.

Authors:  Jie Liu; Warren D Gray; Michael E Davis; Ying Luo
Journal:  Interface Focus       Date:  2012-03-21       Impact factor: 3.906

4.  GlycoRDF: an ontology to standardize glycomics data in RDF.

Authors:  Rene Ranzinger; Kiyoko F Aoki-Kinoshita; Matthew P Campbell; Shin Kawano; Thomas Lütteke; Shujiro Okuda; Daisuke Shinmachi; Toshihide Shikanai; Hiromichi Sawaki; Philip Toukach; Masaaki Matsubara; Issaku Yamada; Hisashi Narimatsu
Journal:  Bioinformatics       Date:  2014-11-11       Impact factor: 6.937

5.  The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics.

Authors:  Kiyoko F Aoki-Kinoshita; Hiromichi Sawaki; Hyun Joo An; Jin Won Cho; Daniel Hsu; Masaki Kato; Shin Kawano; Toshisuke Kawasaki; Kay-Hooi Khoo; Jaehan Kim; Jin-Dong Kim; Xianyu Li; Thomas Lütteke; Shujiro Okuda; Nicolle H Packer; James C Paulson; Rahul Raman; René Ranzinger; Huali Shen; Toshihide Shikanai; Issaku Yamada; Pengyuan Yang; Yoshiki Yamaguchi; Wantao Ying; Jong Shin Yoo; Yang Zhang; Hisashi Narimatsu
Journal:  Glycobiology       Date:  2013-02       Impact factor: 4.313

Review 6.  Using databases and web resources for glycomics research.

Authors:  Kiyoko F Aoki-Kinoshita
Journal:  Mol Cell Proteomics       Date:  2013-01-16       Impact factor: 5.911

7.  GlycoPattern: a web platform for glycan array mining.

Authors:  Sanjay B Agravat; Joel H Saltz; Richard D Cummings; David F Smith
Journal:  Bioinformatics       Date:  2014-08-20       Impact factor: 6.937

8.  Association of Shiga toxin glycosphingolipid receptors with membrane microdomains of toxin-sensitive lymphoid and myeloid cells.

Authors:  Ivan U Kouzel; Gottfried Pohlentz; Wiebke Storck; Lena Radamm; Petra Hoffmann; Martina Bielaszewska; Andreas Bauwens; Christoph Cichon; M Alexander Schmidt; Michael Mormann; Helge Karch; Johannes Müthing
Journal:  J Lipid Res       Date:  2012-12-17       Impact factor: 5.922

Review 9.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

10.  Glycomics profiling of Chinese hamster ovary cell glycosylation mutants reveals N-glycans of a novel size and complexity.

Authors:  Simon J North; Hung-Hsiang Huang; Subha Sundaram; Jihye Jang-Lee; A Tony Etienne; Alana Trollope; Sara Chalabi; Anne Dell; Pamela Stanley; Stuart M Haslam
Journal:  J Biol Chem       Date:  2009-12-01       Impact factor: 5.157

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